BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0732300 Os02g0732300|AK107773
         (101 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0732300  Conserved hypothetical protein                      196   3e-51
Os06g0260000  Conserved hypothetical protein                       99   9e-22

>Os02g0732300 Conserved hypothetical protein
          Length = 101

 Score =  196 bits (499), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MRLPRAQVEKLMGESKDASEAAAKIMELCAAAGAKSASVTPERPPGILRSPRFAATPEWG 60
           MRLPRAQVEKLMGESKDASEAAAKIMELCAAAGAKSASVTPERPPGILRSPRFAATPEWG
Sbjct: 1   MRLPRAQVEKLMGESKDASEAAAKIMELCAAAGAKSASVTPERPPGILRSPRFAATPEWG 60

Query: 61  AGFMVPPPAPGAAKTPQRWPTLPRTKEKKARFVALPDELIA 101
           AGFMVPPPAPGAAKTPQRWPTLPRTKEKKARFVALPDELIA
Sbjct: 61  AGFMVPPPAPGAAKTPQRWPTLPRTKEKKARFVALPDELIA 101



>Os06g0260000 Conserved hypothetical protein
          Length = 294

 Score = 98.6 bits (244), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/123 (52%), Positives = 75/123 (60%), Gaps = 32/123 (26%)

Query: 1   MRLPRAQVEKLMGESKDASEAAAKIMELC---AAAGAKSASVTPERPPGILR-------- 49
           MRLP+AQVEKLMGES+D++EAAAKIM+LC    A G  S + TPER  GILR        
Sbjct: 142 MRLPKAQVEKLMGESRDSAEAAAKIMQLCAAANANGGASGAATPER--GILRTPERSPRF 199

Query: 50  ------------------SPRFAATPEWGAGFMVPPPA-PGAAKTPQRWPTLPRTKEKKA 90
                             SPRFAATPEWG GFM+P P   G  +TP+RWPTLPRT E  +
Sbjct: 200 IPTPDWGVAGGFARTPEVSPRFAATPEWGTGFMMPTPERSGLLRTPERWPTLPRTPEYSS 259

Query: 91  RFV 93
           R V
Sbjct: 260 RDV 262



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.129    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,408,008
Number of extensions: 224310
Number of successful extensions: 1774
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1771
Number of HSP's successfully gapped: 2
Length of query: 101
Length of database: 17,035,801
Length adjustment: 69
Effective length of query: 32
Effective length of database: 13,433,035
Effective search space: 429857120
Effective search space used: 429857120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)