Os06g0260000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0260000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.12 | 0.355 | 12.7 | -0.335 | 0.427 | 0.024 | -0.2 | -6.84 | 0.368 | 1.18 | 29.82 | 3642 | -- | -- |
| 59.33 | 0.359 | 12.6 | 0.702 | 0.441 | -0.707 | -0.185 | -- | 0.427 | 0.54 | 28.9 | 2505 | -- | -- |
| 56.73 | 0.351 | 12.7 | -0.433 | 0.451 | 0.0719 | -- | -6.86 | 0.361 | 1.16 | 29.63 | 2495 | -- | -- |
| 58.88 | 0.357 | 12.6 | 0.723 | 0.417 | -0.789 | -- | -- | 0.415 | 0.976 | 28.95 | 3881 | -- | -- |
| 67.59 | 0.383 | 12.7 | -0.356 | -- | 0.00602 | -- | -6.78 | 0.352 | -- | 29.13 | 1771 | -- | -- |
| 78.96 | 0.417 | 12.6 | 0.496 | 0.36 | -- | -0.331 | -- | 0.5 | 1.11 | -- | -- | -- | -- |
| 79.42 | 0.417 | 12.6 | 0.508 | 0.361 | -- | -- | -- | 0.501 | 1.12 | -- | -- | -- | -- |
| 68.47 | 0.385 | 12.6 | 0.714 | -- | -0.665 | -- | -- | 0.482 | -- | 28.9 | 5997 | -- | -- |
| 71.51 | 0.394 | 12.6 | -- | 0.454 | -0.64 | -- | -- | 0.308 | 1.22 | 29.7 | 2503 | -- | -- |
| 87.5 | 0.437 | 12.6 | 0.522 | -- | -- | -- | -- | 0.509 | -- | -- | -- | -- | -- |
| 86.21 | 0.434 | 12.6 | -- | 0.37 | -- | -- | -- | 0.445 | 1.18 | -- | -- | -- | -- |
| 80.93 | 0.419 | 12.6 | -- | -- | -0.555 | -- | -- | 0.385 | -- | 31 | 5988 | -- | -- |
| 94.67 | 0.454 | 12.6 | -- | -- | -- | -- | -- | 0.451 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 14 |
| 2 | 51.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 21 |
| 14 | 54.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 24 | 54.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 31 | 55.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 37 | 55.34 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 47 | 55.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 66 | 56.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 21 |
| 103 | 56.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 12 |
| 106 | 56.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 11 |
| 108 | 56.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 16 |
| 139 | 56.85 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 149 | 56.91 | temperature | 25 | 1440 | > th | dose dependent | sin | 8 | NA |
| 154 | 56.93 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 159 | 56.95 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 167 | 56.99 | temperature | 30 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 179 | 57.05 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 181 | 57.07 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 184 | 57.08 | temperature | 30 | 4320 | > th | dose dependent | rect. | 10 | 4 |
| 186 | 57.09 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 188 | 57.09 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 9 |
| 191 | 57.09 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 13 |
| 192 | 57.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 207 | 57.11 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 245 | 57.15 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 279 | 57.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 339 | 57.22 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 367 | 57.25 | temperature | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 388 | 57.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 423 | 57.31 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 456 | 57.33 | temperature | 30 | 1440 | > th | dose independent | sin | 8 | NA |
| 650 | 57.51 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 750 | 57.59 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 21 |
| 817 | 57.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 851 | 57.64 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |