BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0731700 Os02g0731700|AK072346
         (323 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0731700  Similar to CONSTANS-like 1 protein                  561   e-160
Os06g0264200  Zinc finger, B-box domain containing protein        236   2e-62

>Os02g0731700 Similar to CONSTANS-like 1 protein
          Length = 323

 Score =  561 bits (1447), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 279/323 (86%), Positives = 279/323 (86%)

Query: 1   MAVESSDERKADEDGAHEELEGQLLYRVPVFDPSLAEFCXXXXXXXXXXXXXXCFKEDAA 60
           MAVESSDERKADEDGAHEELEGQLLYRVPVFDPSLAEFC              CFKEDAA
Sbjct: 1   MAVESSDERKADEDGAHEELEGQLLYRVPVFDPSLAEFCSPPPIDDAAAASSSCFKEDAA 60

Query: 61  DGAVEDAKYPAAAASSPVQQLPDSFVNFEPTDAELREFAADMEALLGQGLDDSNELQDSF 120
           DGAVEDAKYPAAAASSPVQQLPDSFVNFEPTDAELREFAADMEALLGQGLDDSNELQDSF
Sbjct: 61  DGAVEDAKYPAAAASSPVQQLPDSFVNFEPTDAELREFAADMEALLGQGLDDSNELQDSF 120

Query: 121 YMETLGLITPPVEESGRVKMELDGGVASNSRVSLPSCRAHPKPEDVESADVLDIDFNCTS 180
           YMETLGLITPPVEESGRVKMELDGGVASNSRVSLPSCRAHPKPEDVESADVLDIDFNCTS
Sbjct: 121 YMETLGLITPPVEESGRVKMELDGGVASNSRVSLPSCRAHPKPEDVESADVLDIDFNCTS 180

Query: 181 PDEQKSSASNGAAADSQFFHRSLDLRLNYEAIIESWGNSPWTDGRPPHGQLDDFWPNDHH 240
           PDEQKSSASNGAAADSQFFHRSLDLRLNYEAIIESWGNSPWTDGRPPHGQLDDFWPNDHH
Sbjct: 181 PDEQKSSASNGAAADSQFFHRSLDLRLNYEAIIESWGNSPWTDGRPPHGQLDDFWPNDHH 240

Query: 241 YSXXXXXXXXXXXXXXXMMTVRPRMDGPGXXXXXXXXXXXXXXXLFSKKIRYEVRKLNAE 300
           YS               MMTVRPRMDGPG               LFSKKIRYEVRKLNAE
Sbjct: 241 YSGLWAAGGGGHGAEVGMMTVRPRMDGPGREARVTRYREKRRTRLFSKKIRYEVRKLNAE 300

Query: 301 KRPRMKGRFVKRPSAAAAPCAVT 323
           KRPRMKGRFVKRPSAAAAPCAVT
Sbjct: 301 KRPRMKGRFVKRPSAAAAPCAVT 323



>Os06g0264200 Zinc finger, B-box domain containing protein
          Length = 481

 Score =  236 bits (601), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 159/353 (45%), Positives = 193/353 (54%), Gaps = 58/353 (16%)

Query: 4   ESSDERKADEDGAHEELEGQLLYRVPVFDPSLAEFCXXXXXXXXXXXXXXCFKEDAADGA 63
           +S +ERK DE    EE E QLLYRVP+FDP+L+EFC              C +    DGA
Sbjct: 128 DSPEERK-DEGEIVEEQE-QLLYRVPIFDPALSEFCSPPPLEDAAAAVSCCNE----DGA 181

Query: 64  VEDAKYPAAAASS----PVQQLPDSFVNFEPTDAELREFAADMEALLGQGLDDSNELQDS 119
           VE+   P+   ++    P+Q  PD   NF PTDAELREFAADMEALLG+GLDD N+ +DS
Sbjct: 182 VENPTKPSMTTTTATTPPLQFFPDGQANFGPTDAELREFAADMEALLGRGLDDGND-EDS 240

Query: 120 FYMETLGLITPPVEESGRVKMELDGGVASNSRVSLPSCRAHPKPEDVESADVLDIDFNC- 178
           F METLGLI P  +++GRVK+E DG    ++ ++L  C  H    +  S ++LDIDF+C 
Sbjct: 241 FCMETLGLIEPVDDDAGRVKVEADG----DAGMTLAWC--HELDTETSSGEMLDIDFDCG 294

Query: 179 -----TSPDEQKSSASNGAA-ADSQFFHRSLDLRLNYEAIIESWGNSPWTDGRPPHGQLD 232
                T+PDE+  S+   AA  D+Q    +L L LNYEAIIESWG SPWTDG  PH +LD
Sbjct: 295 SPQAATTPDEKVGSSGPAAADDDAQLQQSNLALSLNYEAIIESWGTSPWTDGERPHVKLD 354

Query: 233 DFWPND------------------HHYSXXXXXXXXXXXXXXXMM--------------- 259
           D WP D                  H+ +                M               
Sbjct: 355 DSWPRDYSVRATPCTPYASSHRILHNLAGTDDLLRRRAAVQGVWMAAAGVFGHGGEEQAL 414

Query: 260 TVRPRMDGPGXXXXXXXXXXXXXXXLFSKKIRYEVRKLNAEKRPRMKGRFVKR 312
           T R  MDG G               LFSKKIRYEVRKLNAEKRPRMKGRFVKR
Sbjct: 415 TPRLGMDG-GREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 466



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,902,905
Number of extensions: 436091
Number of successful extensions: 911
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 908
Number of HSP's successfully gapped: 3
Length of query: 323
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 222
Effective length of database: 11,762,187
Effective search space: 2611205514
Effective search space used: 2611205514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)