BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0730400 Os02g0730400|AK101253
(508 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0730400 Conserved hypothetical protein 812 0.0
Os06g0269300 Soluble quinoprotein glucose dehydrogenase dom... 593 e-169
Os02g0234200 Soluble quinoprotein glucose dehydrogenase dom... 213 3e-55
Os08g0414600 Soluble quinoprotein glucose dehydrogenase dom... 128 1e-29
>Os02g0730400 Conserved hypothetical protein
Length = 508
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/473 (85%), Positives = 404/473 (85%)
Query: 36 KVVSGFLSNAASSVMKRLWSLXXXXXXXXXXXXMVKYEGGYTVETVFDGSKLGIEPYAVE 95
KVVSGFLSNAASSVMKRLWSL MVKYEGGYTVETVFDGSKLGIEPYAVE
Sbjct: 36 KVVSGFLSNAASSVMKRLWSLKSTTKTGSGGKSMVKYEGGYTVETVFDGSKLGIEPYAVE 95
Query: 96 VTQGGELLVMDSMNSNIYRIALPLSRYSRPKLVAGSPEGFPGHVDGRPREARMNHPKGFT 155
VTQGGELLVMDSMNSNIYRIALPLSRYSRPKLVAGSPEGFPGHVDGRPREARMNHPKGFT
Sbjct: 96 VTQGGELLVMDSMNSNIYRIALPLSRYSRPKLVAGSPEGFPGHVDGRPREARMNHPKGFT 155
Query: 156 VDGRGNIYVADAMNMAIRKISDTGVTTIAGGKSSRGGHVDGPSDDAKFSTDFEVRYIGSS 215
VDGRGNIYVADAMNMAIRKISDTGVTTIAGGKSSRGGHVDGPSDDAKFSTDFEVRYIGSS
Sbjct: 156 VDGRGNIYVADAMNMAIRKISDTGVTTIAGGKSSRGGHVDGPSDDAKFSTDFEVRYIGSS 215
Query: 216 CSLLVIDRGNQAIREIQLNFDDCVYQYEXXXXXXXXXXXXXXXXXYMLALLQRRVLGMVS 275
CSLLVIDRGNQAIREIQLNFDDCVYQYE YMLALLQRRVLGMVS
Sbjct: 216 CSLLVIDRGNQAIREIQLNFDDCVYQYEAGFPLGVAVLLAAAFFGYMLALLQRRVLGMVS 275
Query: 276 TEDEPETQTPLKASIASIPPYQKPLKQSVRPPLIPNEDESEKQEVEEGFFTSIGKLIVGA 335
TEDEPETQTPLKASIASIPPYQKPLKQSVRPPLIPNEDESEKQEVEEGFFTSIGKLIVGA
Sbjct: 276 TEDEPETQTPLKASIASIPPYQKPLKQSVRPPLIPNEDESEKQEVEEGFFTSIGKLIVGA 335
Query: 336 KSSVAEIVGAAFSRKKRLNIHQQQARVRSWPVQESYAIXXXXXXXXXXXXXXXXXKNYAF 395
KSSVAEIVGAAFSRKKRLNIHQQQARVRSWPVQESYAI KNYAF
Sbjct: 336 KSSVAEIVGAAFSRKKRLNIHQQQARVRSWPVQESYAIPRDETPPPLDTRTPTPRKNYAF 395
Query: 396 MSKEPEKIHHIRHGRSQFNGWNGDAPXXXXXXXXXXXXXXXXXXXXXXXYSSGPQTFYEP 455
MSKEPEKIHHIRHGRSQFNGWNGDAP YSSGPQTFYEP
Sbjct: 396 MSKEPEKIHHIRHGRSQFNGWNGDAPQQQQQQQQQQQIHHQQYLQHHRQYSSGPQTFYEP 455
Query: 456 SCEATNEIVFGAVQEVDSKRRAVEIKPMNHGDPQYDQDGLRHRSSYTGYSNNW 508
SCEATNEIVFGAVQEVDSKRRAVEIKPMNHGDPQYDQDGLRHRSSYTGYSNNW
Sbjct: 456 SCEATNEIVFGAVQEVDSKRRAVEIKPMNHGDPQYDQDGLRHRSSYTGYSNNW 508
>Os06g0269300 Soluble quinoprotein glucose dehydrogenase domain containing
protein
Length = 517
Score = 593 bits (1528), Expect = e-169, Method: Compositional matrix adjust.
Identities = 314/474 (66%), Positives = 346/474 (72%), Gaps = 18/474 (3%)
Query: 36 KVVSGFLSNAASSVMKRLWSLXXXXXXXXXXXX---MVKYEGGYTVETVFDGSKLGIEPY 92
KVV+G LS+ AS+V+K+LWSL MVKYEGGY VETVFDGSKLGIEP+
Sbjct: 38 KVVTGLLSSTASAVVKQLWSLKSTATRTGSAAAGRSMVKYEGGYAVETVFDGSKLGIEPH 97
Query: 93 AVEVTQGGELLVMDSMNSNIYRIALPLSRYSRPKLVAGSPEGFPGHVDGRPREARMNHPK 152
VEVT GELLV+DSMNSN+YR+ LPLSRYSRPKLVAGSPEG GHVDGR REA+MNHPK
Sbjct: 98 DVEVTPSGELLVLDSMNSNVYRVQLPLSRYSRPKLVAGSPEGLSGHVDGRLREAKMNHPK 157
Query: 153 GFTVDGRGNIYVADAMNMAIRKISDTGVTTIAGGKSSRGGHVDGPSDDAKFSTDFEVRYI 212
GFTVD RGNIYVADAMNMAIRKISDTGVTTIAGGKS RGGH+DGPSDDAKFSTDFE+RYI
Sbjct: 158 GFTVDDRGNIYVADAMNMAIRKISDTGVTTIAGGKSMRGGHLDGPSDDAKFSTDFEIRYI 217
Query: 213 GSSCSLLVIDRGNQAIREIQLNFDDCVYQYEXXXXXXXXXXXXXXXXXYMLALLQRRVLG 272
SSCSLLVIDRGNQAIREI L+ DDC YQYE YMLALLQR+VLG
Sbjct: 218 SSSCSLLVIDRGNQAIREIALHNDDCEYQYEAGFPLGIALLFAAGFFGYMLALLQRQVLG 277
Query: 273 MVSTEDEPETQTPLKASIASIPPYQKPLKQSVRPPLIPNEDESEKQEVEEGFFTSIGKLI 332
MVST DEP QTP + SIASIPPYQKPLK S+RPPLIP ED++ K E EEGFFTSIGKLI
Sbjct: 278 MVSTADEP--QTPPRPSIASIPPYQKPLKPSLRPPLIPTEDQAGKHEAEEGFFTSIGKLI 335
Query: 333 VGAKSSVAEIVGAAFSRKKR----LNIHQQQARVRSWPVQESYAIXXXXXXXXXXXXXXX 388
GAKSS EI FSRKKR + H QQ R WPVQESYAI
Sbjct: 336 GGAKSSAVEI----FSRKKRPTHQYHHHLQQQRANPWPVQESYAIPHDETPPPLDMRAAT 391
Query: 389 XXKNYAFMSKEPEKIHHIRHGRSQFNGWN-GDAPXXXXXXXXXXXXXXXXXXXXXXXYSS 447
KNYAFM+KEPEK+HH+RHGR FNGW+ AP YS+
Sbjct: 392 PRKNYAFMTKEPEKVHHVRHGRPYFNGWDMQHAP----QQQPEQQMYHQQHLQQHRQYSA 447
Query: 448 GPQTFYEPSCEATNEIVFGAVQEVDSKRRAVEIKPMNHGDPQYDQDGLRHRSSY 501
GPQTFYE SCE TNEIVFGAVQEVD+KRR VEIK +N+GD Y+Q G+R+R++Y
Sbjct: 448 GPQTFYEQSCETTNEIVFGAVQEVDTKRRMVEIKAVNYGDTFYEQYGMRYRNNY 501
>Os02g0234200 Soluble quinoprotein glucose dehydrogenase domain containing
protein
Length = 493
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 125/284 (44%), Positives = 169/284 (59%), Gaps = 22/284 (7%)
Query: 70 VKYEGGYTVETVFDGSKLGIEPYAVEVT--QGGELLVMDSMNSNIYRIALPLSRYSRPKL 127
+++E GY VET+ +G KLG+ P+ + V+ +GGELL +DS +SNI RI PLS YSR +L
Sbjct: 69 LQFESGYFVETLVEGDKLGVTPHTIRVSPVEGGELLAVDSAHSNIVRITPPLSEYSRGRL 128
Query: 128 VAGSPEGFPGHVDGRPREARMNHPKGFTVDGRGNIYVADAMNMAIRKISDTGVTTIAGGK 187
VAGS +G GH+DG+P +AR P G VD GN+YVAD N+AIRKI ++GVTTIAGGK
Sbjct: 129 VAGSFQGHSGHIDGKPSDARFKRPTGVAVDDTGNVYVADTANLAIRKIGESGVTTIAGGK 188
Query: 188 SSRGGHVDGPSDDAKFSTDFEVRYIGSSCSLLVIDRGNQAIREIQLNFDDCVYQYEXXXX 247
S+ G+ DGPS+DAKFSTDF+V Y+ CSLLVIDRGN A+R+I L +DC YQ
Sbjct: 189 SNIPGYRDGPSEDAKFSTDFDVVYVKKMCSLLVIDRGNAALRKIALPQEDCTYQDATLLS 248
Query: 248 XXXXXXXXXXXXXYMLALLQRRVLGMVSTE--DEPETQTPLKASIASIPPYQKPLKQSVR 305
Y+ +++Q G + E + PE + +++ +
Sbjct: 249 SDIILVIGAVVAGYIFSVVQHG-FGSSTAEKIEAPEDEHQESSTVG-------------K 294
Query: 306 PPLIPNEDESEKQEVEEGFFTSIGKLIVGAKSSVAEIVGAAFSR 349
PPL+ ES K+E G + S+G LI V E VG R
Sbjct: 295 PPLV---VESLKEEPSAG-WPSLGTLIGDLLKLVIEGVGNQLLR 334
>Os08g0414600 Soluble quinoprotein glucose dehydrogenase domain containing
protein
Length = 275
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 109/177 (61%), Gaps = 6/177 (3%)
Query: 73 EGGYTVETVFD----GSKLGIEPYAV-EVTQGGELLVMDSMNSNIYRIALPLSRYSRPKL 127
+ GYTV T D G+ PYA+ + G+L+++DS S +Y +ALPLS + +
Sbjct: 30 DDGYTVTTAADLNHPGAPAAPHPYALLPRPRAGDLVLLDSAASALYTLALPLSGGAAART 89
Query: 128 VAGSPEGFPGHVDGRPREARMNHPKGFTVDGRGNIYVADAMNMAIRKISDTG-VTTIAGG 186
+AG G G DG PR+A + P+ VD N+YVAD MN A+RKI+ +G TTIAGG
Sbjct: 90 LAGGGGGPAGFADGEPRDAAFDRPRSLAVDHADNVYVADRMNGAVRKIAPSGFTTTIAGG 149
Query: 187 KSSRGGHVDGPSDDAKFSTDFEVRYIGSSCSLLVIDRGNQAIREIQLNFDDCVYQYE 243
+S G DGP+ +A FS+DFE+ Y+ C+LLV DRGN+ IR+I L +DC + +
Sbjct: 150 RSKGPGRKDGPAQNATFSSDFELVYVPKMCALLVTDRGNRLIRQINLKQEDCARETQ 206
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,301,727
Number of extensions: 592107
Number of successful extensions: 1035
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1019
Number of HSP's successfully gapped: 4
Length of query: 508
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 403
Effective length of database: 11,553,331
Effective search space: 4655992393
Effective search space used: 4655992393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)