BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0721700 Os02g0721700|AK061514
(167 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0721700 Conserved hypothetical protein 271 2e-73
Os09g0297800 Conserved hypothetical protein 138 2e-33
Os06g0303800 Conserved hypothetical protein 114 3e-26
Os02g0541900 Conserved hypothetical protein 75 3e-14
Os04g0500300 Conserved hypothetical protein 68 2e-12
Os04g0500400 Similar to Hydroxyproline-rich glycoprotein DZ... 67 8e-12
>Os02g0721700 Conserved hypothetical protein
Length = 167
Score = 271 bits (692), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 132/167 (79%), Positives = 132/167 (79%)
Query: 1 MAVDRXXXXXXXXXXXXXXXXXXXPFISDSVFLGSVGSTGRSLLQAKKNCPVNFEFQNYT 60
MAVDR PFISDSVFLGSVGSTGRSLLQAKKNCPVNFEFQNYT
Sbjct: 1 MAVDRGLLLLVVSAAVLVGLASASPFISDSVFLGSVGSTGRSLLQAKKNCPVNFEFQNYT 60
Query: 61 IITSKCKGPRFPAKQCCDAFKEFACPFNEYINDESNDCASTMFSYINLYGKYPPGLFANE 120
IITSKCKGPRFPAKQCCDAFKEFACPFNEYINDESNDCASTMFSYINLYGKYPPGLFANE
Sbjct: 61 IITSKCKGPRFPAKQCCDAFKEFACPFNEYINDESNDCASTMFSYINLYGKYPPGLFANE 120
Query: 121 CREGKLGLSCEGVSQKDXXXXXXXXXXXXXXXXFIMLTFGLAALWFH 167
CREGKLGLSCEGVSQKD FIMLTFGLAALWFH
Sbjct: 121 CREGKLGLSCEGVSQKDSVVSSAGQQAQSSLLAFIMLTFGLAALWFH 167
>Os09g0297800 Conserved hypothetical protein
Length = 174
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 69/88 (78%)
Query: 43 LLQAKKNCPVNFEFQNYTIITSKCKGPRFPAKQCCDAFKEFACPFNEYINDESNDCASTM 102
LLQAKK+CPVNFE NYT+ITS+CKGP +P CC A K+ ACPF YIND CA++M
Sbjct: 45 LLQAKKDCPVNFEEANYTVITSRCKGPMYPPALCCQALKDLACPFTAYINDAQTTCAASM 104
Query: 103 FSYINLYGKYPPGLFANECREGKLGLSC 130
FSYINLYGKYPPGLFAN C+EG GL C
Sbjct: 105 FSYINLYGKYPPGLFANTCKEGANGLEC 132
>Os06g0303800 Conserved hypothetical protein
Length = 137
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Query: 41 RSLLQAKKNCPVNFEFQNYTIITSKCKGPRFPAKQCCDAFKEFACPFNEYINDESNDCAS 100
RSLLQAK CPV+FE QNYT ITSKCK P +PA CC A EFAC F++YINDES +CA
Sbjct: 8 RSLLQAKGGCPVSFENQNYTTITSKCKSP-WPADLCCPALNEFACNFSQYINDESTNCAE 66
Query: 101 TMFSYINLYGKYPPGLFANEC 121
+M+ Y+N +G YP GLF+NEC
Sbjct: 67 SMWVYLNAHGSYPAGLFSNEC 87
>Os02g0541900 Conserved hypothetical protein
Length = 147
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 50 CPVNFEFQN--YTIITSKCKGPRFPAKQCCDAFKEFACPFNEYINDESNDCASTMFSYIN 107
CPV F+ +T + KCK +CCDAFKE ACP N +ND +N C MF +I+
Sbjct: 67 CPVRFDEMKGPFTELGKKCKAAS--VTECCDAFKEIACPHNTLLNDLNNGCGDDMFYFIH 124
Query: 108 LYGKYPPGLFANECREGKLGLSC 130
YG+ PPG +C EG G+ C
Sbjct: 125 TYGRLPPGTIFKKCVEGPYGMKC 147
>Os04g0500300 Conserved hypothetical protein
Length = 152
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 43/81 (53%)
Query: 50 CPVNFEFQNYTIITSKCKGPRFPAKQCCDAFKEFACPFNEYINDESNDCASTMFSYINLY 109
CPV F+ I K K CC+AFK FACP N+ IND +N CA MF I+ Y
Sbjct: 72 CPVRFDKMKGPAIELGKKCKTTGVKVCCEAFKTFACPHNKLINDVNNGCADEMFYTIHTY 131
Query: 110 GKYPPGLFANECREGKLGLSC 130
G+ PG +C EG G+ C
Sbjct: 132 GQLLPGTIFKKCLEGPHGMKC 152
>Os04g0500400 Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor
Length = 150
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 48 KNCPVNFE-FQNYTIITSKCKGPRFPAKQCCDAFKEFACPFNEYINDESNDCASTMFSYI 106
K CPV FE + + + +KC + K+CC+ FK+ ACP+N +ND +N CA+ F I
Sbjct: 68 KPCPVEFEQVKGFGELGAKCNDKQ-TMKECCELFKKIACPYNHLLNDITNVCANEFFYLI 126
Query: 107 NLYGKYPPGLFANECREGKLGLSC 130
+ GK PG C EG +G++C
Sbjct: 127 HTKGKLQPGTILENCNEGPMGINC 150
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,353,725
Number of extensions: 150646
Number of successful extensions: 280
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 6
Length of query: 167
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 74
Effective length of database: 12,179,899
Effective search space: 901312526
Effective search space used: 901312526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 152 (63.2 bits)