BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0720700 Os02g0720700|AK101764
(783 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0720700 Similar to Chloride channel protein CLC-f (AtC... 1342 0.0
Os08g0499200 Similar to Chloride channel protein CLC-f (AtC... 874 0.0
Os01g0704700 Similar to Chloride channel protein CLC-f (AtC... 119 1e-26
>Os02g0720700 Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform
2
Length = 783
Score = 1342 bits (3474), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 672/783 (85%), Positives = 672/783 (85%)
Query: 1 MSSRGGEDDDHASLLRSHXXXXXXXXXXXXXXXXXXRAVGGHHHNQHADVEAVGEATVTA 60
MSSRGGEDDDHASLLRSH RAVGGHHHNQHADVEAVGEATVTA
Sbjct: 1 MSSRGGEDDDHASLLRSHPAAGAGAGSGSSSPCPSPRAVGGHHHNQHADVEAVGEATVTA 60
Query: 61 SPRRSGGVRGLLRHLDXXXXXXXXXXXXXXXXXXXXDRPEPSPTSSPQQRERVGEELGDG 120
SPRRSGGVRGLLRHLD DRPEPSPTSSPQQRERVGEELGDG
Sbjct: 61 SPRRSGGVRGLLRHLDRRLSARGSGGRRSQQPPQQLDRPEPSPTSSPQQRERVGEELGDG 120
Query: 121 APPEWXXXXXXXXXXXXXXXXVAAFNRGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRI 180
APPEW VAAFNRGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRI
Sbjct: 121 APPEWALLLIGCLLGLATGICVAAFNRGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRI 180
Query: 181 LLIPXXXXXXXXXXXXLLEIFDQLKLVKPPQKQGINFLAAIFPTVNAVQAAVTLGTGCSL 240
LLIP LLEIFDQLKLVKPPQKQGINFLAAIFPTVNAVQAAVTLGTGCSL
Sbjct: 181 LLIPVTGGVVVGMMHGLLEIFDQLKLVKPPQKQGINFLAAIFPTVNAVQAAVTLGTGCSL 240
Query: 241 GPEGPSVDIGKSCANGCSEMMENNRERRIXXXXXXXXXXXXXXXXXXXXGCFFAIETVLR 300
GPEGPSVDIGKSCANGCSEMMENNRERRI GCFFAIETVLR
Sbjct: 241 GPEGPSVDIGKSCANGCSEMMENNRERRIALVAAGAAAGIASGFNAAVAGCFFAIETVLR 300
Query: 301 PLKAENSPPFTTAMIILASVISSTVSNVLLGERPAFIVPAYELKSAAELPLYLILGMLCG 360
PLKAENSPPFTTAMIILASVISSTVSNVLLGERPAFIVPAYELKSAAELPLYLILGMLCG
Sbjct: 301 PLKAENSPPFTTAMIILASVISSTVSNVLLGERPAFIVPAYELKSAAELPLYLILGMLCG 360
Query: 361 AVSVVFGRLVVWFSNFFGYLKERYDFPIVVYPXXXXXXXXXXXXKYPGILYWGFTNVEEI 420
AVSVVFGRLVVWFSNFFGYLKERYDFPIVVYP KYPGILYWGFTNVEEI
Sbjct: 361 AVSVVFGRLVVWFSNFFGYLKERYDFPIVVYPALGGLGAGLIALKYPGILYWGFTNVEEI 420
Query: 421 LHTGKSASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXYL 480
LHTGKSASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMI YL
Sbjct: 421 LHTGKSASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAGYL 480
Query: 481 INSAVPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLA 540
INSAVPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLA
Sbjct: 481 INSAVPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLA 540
Query: 541 IWVPSVVNQSKDGEPSRFRTPRRGYSSLSSEDRNSKSWRRGDSVNDLELTSLRTDNYDTY 600
IWVPSVVNQSKDGEPSRFRTPRRGYSSLSSEDRNSKSWRRGDSVNDLELTSLRTDNYDTY
Sbjct: 541 IWVPSVVNQSKDGEPSRFRTPRRGYSSLSSEDRNSKSWRRGDSVNDLELTSLRTDNYDTY 600
Query: 601 NEEMLLDDLKVSQAMSKSYVKIPTSAMVTEALKLLHDKQQNCGLVVDCEDFLEGIVTLGD 660
NEEMLLDDLKVSQAMSKSYVKIPTSAMVTEALKLLHDKQQNCGLVVDCEDFLEGIVTLGD
Sbjct: 601 NEEMLLDDLKVSQAMSKSYVKIPTSAMVTEALKLLHDKQQNCGLVVDCEDFLEGIVTLGD 660
Query: 661 IRRMGFELHGDSFTSGDQLKPAENSSTISLCLTRGFQYEGNERGLLTCFPDTDLTTAKNL 720
IRRMGFELHGDSFTSGDQLKPAENSSTISLCLTRGFQYEGNERGLLTCFPDTDLTTAKNL
Sbjct: 661 IRRMGFELHGDSFTSGDQLKPAENSSTISLCLTRGFQYEGNERGLLTCFPDTDLTTAKNL 720
Query: 721 MEARGIKQLPVVKRGVGHRTEGKRKLIALLHYDSIGHCLREEIENWKAIYQIKEDFHLIA 780
MEARGIKQLPVVKRGVGHRTEGKRKLIALLHYDSIGHCLREEIENWKAIYQIKEDFHLIA
Sbjct: 721 MEARGIKQLPVVKRGVGHRTEGKRKLIALLHYDSIGHCLREEIENWKAIYQIKEDFHLIA 780
Query: 781 NGH 783
NGH
Sbjct: 781 NGH 783
>Os08g0499200 Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform
2
Length = 750
Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/675 (66%), Positives = 506/675 (74%), Gaps = 8/675 (1%)
Query: 115 EELGDGAPPEWXXXXXXXXXXXXXXXXVAAFNRGVHVIHEWAWAGTPNEGAAWLRLQRLA 174
+ELGDGAPPEW VAAFNRGVH+IHEWAWAGTP EGAAWLRLQRLA
Sbjct: 78 DELGDGAPPEWALLLVGCLLGLATGICVAAFNRGVHIIHEWAWAGTPTEGAAWLRLQRLA 137
Query: 175 DTWHRILLIPXXXXXXXXXXXXLLEIFDQLKLVKPPQKQGINFLAAIFPTVNAVQAAVTL 234
DTWHRILLIP LLEIF+Q+K Q++G++F+AAIFPT+ A+QAA+TL
Sbjct: 138 DTWHRILLIPVTGGVVVGMMHGLLEIFEQIKQSLSSQREGVDFMAAIFPTIKAIQAAITL 197
Query: 235 GTGCSLGPEGPSVDIGKSCANGCSEMMENNRERRIXXXXXXXXXXXXXXXXXXXXGCFFA 294
GTGCSLGPEGPSVDIGKSCA GC+EMMENNRERRI GCFFA
Sbjct: 198 GTGCSLGPEGPSVDIGKSCAYGCAEMMENNRERRIALVAAGSAAGIASGFNAAVAGCFFA 257
Query: 295 IETVLRPLKAENSPPFTTAMIILASVISSTVSNVLLGERPAFIVPAYELKSAAELPLYLI 354
IETVLRPL+AENSPPFTTAMIILASVISSTVSNVLLGE+ AFIVP YELKSAAELPLYLI
Sbjct: 258 IETVLRPLRAENSPPFTTAMIILASVISSTVSNVLLGEKAAFIVPTYELKSAAELPLYLI 317
Query: 355 LGMLCGAVSVVFGRLVVWFSNFFGYLKERYDFPIVVYPXXXXXXXXXXXXKYPGILYWGF 414
LGMLCG VSV F +LVVWF+ F +++++ P VV P +YPGILYWGF
Sbjct: 318 LGMLCGVVSVAFRQLVVWFTKTFDLIRKKFSLPAVVCPALGGLGAGLIALRYPGILYWGF 377
Query: 415 TNVEEILHTGKSASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXX 474
TNV+EILHTGKSASAPGIWLL QLAAAKVVATALCKGSGLVGGLYAPSLMI
Sbjct: 378 TNVDEILHTGKSASAPGIWLLAQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFG 437
Query: 475 XXXXYLINSAVPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLM 534
LINSA+PGN AVA PQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLM
Sbjct: 438 GSAAELINSAIPGNTAVAHPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLM 497
Query: 535 GAVGLAIWVPSVVNQSKDGEPSRFRTPRRGYSSLSSEDRNSKSWRRGDSVNDLELTSLRT 594
GAVGLAIWVPSVV S + E +PR GYSSL +++ RR +D+EL L
Sbjct: 498 GAVGLAIWVPSVV-MSGNKEAFEATSPRHGYSSLLPPTDRNETDRRRPDRDDVELAILDD 556
Query: 595 D--NYDTYNEEMLLDDLKVSQAMSKSYVKIPTSAMVTEALKLLHDKQQNCGLVVDCEDFL 652
D Y NE+MLLDDLKVSQAMSK ++K+ + + EA +L+HDKQQNC LVVD EDFL
Sbjct: 557 DPYRYGINNEDMLLDDLKVSQAMSKQFIKVTPTVTIKEATRLMHDKQQNCVLVVDSEDFL 616
Query: 653 EGIVTLGDIRRMGF--ELHGDSFTSGDQLKPAE-NSSTISLCLTRGFQYEGNERGLLTCF 709
EGIVT+GDIRR GF EL D+ +G + NSS +S CLTRGFQY GNERGL+TCF
Sbjct: 617 EGIVTIGDIRRKGFESELSEDTPRNGANSSTLDANSSLVSSCLTRGFQYHGNERGLVTCF 676
Query: 710 PDTDLTTAKNLMEARGIKQLPVVKRGVGHRTEGKRKLIALLHYDSIGHCLREEIENWKAI 769
PDTDL+TAK LME +GIKQLPVVKR G R +G+RK++ LLHYDSIG CLREE+E WKAI
Sbjct: 677 PDTDLSTAKVLMEVKGIKQLPVVKRRAGRRNDGRRKVLGLLHYDSIGWCLREELERWKAI 736
Query: 770 YQIKEDFHLIA-NGH 783
YQ +E+F A NGH
Sbjct: 737 YQ-RENFQQSAVNGH 750
>Os01g0704700 Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform
2
Length = 312
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 107/211 (50%), Gaps = 10/211 (4%)
Query: 142 VAAFNRGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPXXXXXXXXXXXXLLEIF 201
V FN VH I + W G P GA+WLR + + + W R++L+P ++ +F
Sbjct: 102 VVLFNLSVHEIRDLFWDGIPLRGASWLREESIGEIWQRVILVP-------VSGGIIVGVF 154
Query: 202 DQLK--LVKPPQKQGINFLAAIFPTVNAVQAAVTLGTGCSLGPEGPSVDIGKSCANGCSE 259
+ L+ + A P + A+ A+ TLGTG SLGPEGPSV+IG S A G
Sbjct: 155 NTLRSSIATNSNDTMSKIKGAFRPFLKAMAASFTLGTGNSLGPEGPSVEIGSSIAKGFGN 214
Query: 260 MMENNRERRIXXXXXXXXXXXXXXXXXXXXGCFFAIETVLRP-LKAENSPPFTTAMIILA 318
+ + +++ GCFFA+E+VL P +S +T M+IL+
Sbjct: 215 VFKLEGGKKLSLVAAGSAAGIASGFNAAVAGCFFAVESVLWPTSVDSSSLSNSTPMVILS 274
Query: 319 SVISSTVSNVLLGERPAFIVPAYELKSAAEL 349
+VI+S VS + LG PAF VP Y+ +S E+
Sbjct: 275 AVIASVVSEIGLGSDPAFTVPEYDFRSPTEI 305
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,947,598
Number of extensions: 896175
Number of successful extensions: 2328
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2316
Number of HSP's successfully gapped: 3
Length of query: 783
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 674
Effective length of database: 11,344,475
Effective search space: 7646176150
Effective search space used: 7646176150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)