BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0719000 Os02g0719000|AK073093
         (377 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0719000  Similar to Rho GDP-dissociation inhibitor 1 (R...   642   0.0  
Os06g0318300  Similar to Rho GDP-dissociation inhibitor 1 (R...   288   4e-78
Os01g0913600  Similar to Rho GDP-dissociation inhibitor 1 (R...   240   2e-63

>Os02g0719000 Similar to Rho GDP-dissociation inhibitor 1 (Rho GDI-1) (AtRhoGDI1)
          Length = 377

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/377 (85%), Positives = 322/377 (85%)

Query: 1   MRADRAELRELKPPYPLSAPGLPLLDPTICPRHASSRASRLACVRARRAAPSFWSLAPRY 60
           MRADRAELRELKPPYPLSAPGLPLLDPTICPRHASSRASRLACVRARRAAPSFWSLAPRY
Sbjct: 1   MRADRAELRELKPPYPLSAPGLPLLDPTICPRHASSRASRLACVRARRAAPSFWSLAPRY 60

Query: 61  FPLVPNPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWFGSFCSWVDAGCVRACVR 120
           FPLVPNPE                                 WFGSFCSWVDAGCVRACVR
Sbjct: 61  FPLVPNPESASASVLALLLWYLCSRLLCLATLLPPPHCLLPWFGSFCSWVDAGCVRACVR 120

Query: 121 AEAMSSAVDAISCSKGIAAPPTEEATKERVAVVGKNGGVEHGGDAATMNGKQCGEAPHCR 180
           AEAMSSAVDAISCSKGIAAPPTEEATKERVAVVGKNGGVEHGGDAATMNGKQCGEAPHCR
Sbjct: 121 AEAMSSAVDAISCSKGIAAPPTEEATKERVAVVGKNGGVEHGGDAATMNGKQCGEAPHCR 180

Query: 181 KESNXXXXXXXXKAPKAIDLGPRVSIKDQLEKDKDDESLRRWKEQLLGSVDLNSVGETLE 240
           KESN        KAPKAIDLGPRVSIKDQLEKDKDDESLRRWKEQLLGSVDLNSVGETLE
Sbjct: 181 KESNEEEEDDEEKAPKAIDLGPRVSIKDQLEKDKDDESLRRWKEQLLGSVDLNSVGETLE 240

Query: 241 PDVKIMSLAILSPGRPDIFLPLPVEPNAKGVWFTLKEGSLYKLKFTFSVSNNIVSGLRYT 300
           PDVKIMSLAILSPGRPDIFLPLPVEPNAKGVWFTLKEGSLYKLKFTFSVSNNIVSGLRYT
Sbjct: 241 PDVKIMSLAILSPGRPDIFLPLPVEPNAKGVWFTLKEGSLYKLKFTFSVSNNIVSGLRYT 300

Query: 301 NAVWKTGIKVDSHKEMLGTFSPQXXXXXXXXXXXXXXSGMFARGSYSARTKFLDDDRKCY 360
           NAVWKTGIKVDSHKEMLGTFSPQ              SGMFARGSYSARTKFLDDDRKCY
Sbjct: 301 NAVWKTGIKVDSHKEMLGTFSPQPEPYTYVTPEETTPSGMFARGSYSARTKFLDDDRKCY 360

Query: 361 LEINYTFDIRREWPALS 377
           LEINYTFDIRREWPALS
Sbjct: 361 LEINYTFDIRREWPALS 377



>Os06g0318300 Similar to Rho GDP-dissociation inhibitor 1 (Rho GDI-1) (AtRhoGDI1)
          Length = 270

 Score =  288 bits (737), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 142/186 (76%), Positives = 156/186 (83%), Gaps = 1/186 (0%)

Query: 193 KAPKAIDLGPRVSIKDQLEKDKDDESLRRWKEQLLGSVDLNSVGETLEPDVKIMSLAILS 252
           K  +AIDLGPRVSIK+QLE DK+DESLRRWKEQLLGSVDLNSVGE+LEPDV+I SL ILS
Sbjct: 85  KVAEAIDLGPRVSIKEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPDVRITSLCILS 144

Query: 253 PGRPDIFLPLPVEP-NAKGVWFTLKEGSLYKLKFTFSVSNNIVSGLRYTNAVWKTGIKVD 311
           PGRPD+ LPLPVEP N+K  WFTLKEGS Y+LKFTFSVS+NIVSGLRYTN VWK GI+VD
Sbjct: 145 PGRPDVLLPLPVEPSNSKEPWFTLKEGSTYRLKFTFSVSSNIVSGLRYTNTVWKAGIRVD 204

Query: 312 SHKEMLGTFSPQXXXXXXXXXXXXXXSGMFARGSYSARTKFLDDDRKCYLEINYTFDIRR 371
             KEMLGTFSPQ              SG+FARGSYSA+TKF+DDDRKCYLEINYTFDIRR
Sbjct: 205 KTKEMLGTFSPQLEPYTYVTPEETTPSGVFARGSYSAKTKFVDDDRKCYLEINYTFDIRR 264

Query: 372 EWPALS 377
           +WP  S
Sbjct: 265 DWPCKS 270



>Os01g0913600 Similar to Rho GDP-dissociation inhibitor 1 (Rho GDI-1) (AtRhoGDI1)
          Length = 217

 Score =  240 bits (612), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 110/182 (60%), Positives = 139/182 (76%)

Query: 196 KAIDLGPRVSIKDQLEKDKDDESLRRWKEQLLGSVDLNSVGETLEPDVKIMSLAILSPGR 255
           +A+ LGP+V +K+QLE DKDDESLRRWKEQLLG VD   +GET EP+VK+++L ILSP R
Sbjct: 36  RAVVLGPQVPLKEQLELDKDDESLRRWKEQLLGQVDTEQLGETAEPEVKVLNLTILSPDR 95

Query: 256 PDIFLPLPVEPNAKGVWFTLKEGSLYKLKFTFSVSNNIVSGLRYTNAVWKTGIKVDSHKE 315
           PD+ LP+P  P+ KG  F LK+GS Y  +F+F VSNNIVSGL+YTN VWKTG++V++ K 
Sbjct: 96  PDLVLPIPFVPDEKGYAFALKDGSTYSFRFSFIVSNNIVSGLKYTNTVWKTGVRVENQKV 155

Query: 316 MLGTFSPQXXXXXXXXXXXXXXSGMFARGSYSARTKFLDDDRKCYLEINYTFDIRREWPA 375
           MLGTFSPQ              +GMFARGSYSA+ KF+DDD KCYLE++Y F+IR+EWP 
Sbjct: 156 MLGTFSPQLEPYTYEGEEETTPAGMFARGSYSAKLKFVDDDGKCYLEMSYYFEIRKEWPT 215

Query: 376 LS 377
           + 
Sbjct: 216 IQ 217



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,411,719
Number of extensions: 483861
Number of successful extensions: 1435
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1433
Number of HSP's successfully gapped: 3
Length of query: 377
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 274
Effective length of database: 11,657,759
Effective search space: 3194225966
Effective search space used: 3194225966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)