BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0717800 Os02g0717800|AK105284
(98 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0717800 Similar to 60S ribosomal protein L31 157 2e-39
Os06g0319700 Similar to 60S ribosomal protein L31 134 2e-32
Os08g0505300 Similar to 60S ribosomal protein L31 79 5e-16
AK107805 77 4e-15
>Os02g0717800 Similar to 60S ribosomal protein L31
Length = 98
Score = 157 bits (397), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/98 (83%), Positives = 82/98 (83%)
Query: 1 FFLINSTFKKKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKAIWTNGXXXXXXXXXXXXXX 60
FFLINSTFKKKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKAIWTNG
Sbjct: 1 FFLINSTFKKKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKAIWTNGIRSVPRRVRVRISR 60
Query: 61 XXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVEDEE 98
NDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVEDEE
Sbjct: 61 KRNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVEDEE 98
>Os06g0319700 Similar to 60S ribosomal protein L31
Length = 124
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/96 (69%), Positives = 74/96 (77%)
Query: 3 LINSTFKKKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKAIWTNGXXXXXXXXXXXXXXXX 62
L TFKKKAPNAIKEIRKFAQKAMGT D+R+DVKLNK IW++G
Sbjct: 29 LHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNKHIWSSGIRSVPRRVRVRIARRR 88
Query: 63 NDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVEDEE 98
NDEEDAKEELYSLVTVAE+P EGLKGLGTK+VED+E
Sbjct: 89 NDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVEDDE 124
>Os08g0505300 Similar to 60S ribosomal protein L31
Length = 66
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 46/64 (71%)
Query: 33 RIDVKLNKAIWTNGXXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTK 92
R+DVKLNK IW++G NDEEDAKEELYSLVTVAE+P EGLKGLGTK
Sbjct: 1 RVDVKLNKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTK 60
Query: 93 VVED 96
VV++
Sbjct: 61 VVDE 64
>AK107805
Length = 126
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 5 NSTFKKKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKAIWTNGXXXXXXXXXXXXXXXXND 64
++ FKK+AP AIKE+ FAQKAMGT D+R+D KLN+ +W G ND
Sbjct: 35 DTAFKKRAPRAIKEVVAFAQKAMGTQDVRLDPKLNQEVWKYGVKNFPRRLRVRLERKRND 94
Query: 65 EEDAKEELYSLVTVAEIPAEGL---KGLGTKVVEDE 97
+E AKE+LY+ +P GL KGL T V++ E
Sbjct: 95 DEGAKEKLYTYA----MPVLGLGTCKGLQTTVIDQE 126
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.131 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,422,011
Number of extensions: 62670
Number of successful extensions: 74
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 4
Length of query: 98
Length of database: 17,035,801
Length adjustment: 67
Effective length of query: 31
Effective length of database: 13,537,463
Effective search space: 419661353
Effective search space used: 419661353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)