Os02g0717800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L31.
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Os02g0717800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L31.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.82 | 0.412 | 13.6 | -0.149 | 0.946 | 0.338 | 0.777 | -1.98 | -0.237 | 17.7 | 20.51 | 2892 | -- | -- |
| 81.64 | 0.421 | 13.5 | 0.137 | 0.931 | 0.81 | 0.853 | -- | -0.164 | 17.7 | 18.79 | 4036 | -- | -- |
| 78.26 | 0.412 | 13.6 | -0.157 | 0.946 | 0.353 | -- | -1.97 | -0.231 | 17.7 | 20.5 | 2827 | -- | -- |
| 82.89 | 0.424 | 13.5 | 0.14 | 0.954 | 0.89 | -- | -- | -0.143 | 17.6 | 18.8 | 2785 | -- | -- |
| 125.05 | 0.521 | 13.6 | -0.163 | -- | 0.288 | -- | -2.02 | -0.255 | -- | 20.6 | 2935 | -- | -- |
| 91.79 | 0.449 | 13.5 | 0.577 | 0.924 | -- | 0.97 | -- | 0.0212 | 17.8 | -- | -- | -- | -- |
| 94.09 | 0.454 | 13.5 | 0.571 | 0.93 | -- | -- | -- | 0.0253 | 17.7 | -- | -- | -- | -- |
| 128.49 | 0.528 | 13.5 | -0.0264 | -- | 0.805 | -- | -- | -0.131 | -- | 16.37 | 23572 | -- | -- |
| 83.31 | 0.425 | 13.5 | -- | 0.967 | 0.952 | -- | -- | -0.175 | 17.7 | 18.7 | 2849 | -- | -- |
| 138.97 | 0.551 | 13.4 | 0.542 | -- | -- | -- | -- | 0.00318 | -- | -- | -- | -- | -- |
| 102.68 | 0.474 | 13.5 | -- | 0.921 | -- | -- | -- | -0.0383 | 17.7 | -- | -- | -- | -- |
| 128.23 | 0.527 | 13.5 | -- | -- | 0.769 | -- | -- | -0.147 | -- | 15.6 | 24221 | -- | -- |
| 146.71 | 0.565 | 13.5 | -- | -- | -- | -- | -- | -0.0569 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.57 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 2 | 75.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 3 | 75.64 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 5 | 75.66 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 9 | 75.77 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 10 | 75.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 13 | 75.80 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 15 | 75.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 19 | 75.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 20 | 75.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 26 | 75.90 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 28 | 75.90 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 78 | 76.35 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 86 | 76.41 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 140 | 76.78 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 153 | 76.89 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 157 | 76.90 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 162 | 76.91 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 170 | 76.93 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 175 | 76.94 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 182 | 76.96 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 201 | 77.05 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 210 | 77.08 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 235 | 77.12 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 9 | NA |
| 248 | 77.16 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 252 | 77.16 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 253 | 77.16 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 269 | 77.21 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 273 | 77.21 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 286 | 77.24 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 293 | 77.26 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 297 | 77.27 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 299 | 77.27 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 304 | 77.28 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 331 | 77.33 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 332 | 77.34 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 352 | 77.34 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 383 | 77.39 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 386 | 77.39 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 407 | 77.45 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 410 | 77.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 411 | 77.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 418 | 77.48 | atmosphere | 995 | 43200 | < th | dose independent | sin | 7 | NA |
| 432 | 77.50 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 490 | 77.62 | humidity | 50 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 511 | 77.64 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 520 | 77.67 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 544 | 77.68 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 568 | 77.73 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 570 | 77.73 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 618 | 77.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 620 | 77.80 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 621 | 77.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 629 | 77.81 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 630 | 77.81 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 632 | 77.81 | humidity | 50 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 648 | 77.84 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 685 | 77.86 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 738 | 77.90 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 759 | 77.92 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 787 | 77.94 | atmosphere | 1005 | 14400 | > th | dose dependent | sin | 12 | NA |
| 871 | 78.00 | atmosphere | 995 | 43200 | > th | dose independent | sin | 7 | NA |
| 890 | 78.01 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 942 | 78.03 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 976 | 78.04 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 18 | 20 |
| 988 | 78.05 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |