BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0717800 Os02g0717800|AK105284
         (98 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G19740.1  | chr2:8513577-8514346 FORWARD LENGTH=120            127   9e-31
AT5G56710.1  | chr5:22944003-22944767 REVERSE LENGTH=120          125   6e-30
AT4G26230.1  | chr4:13286026-13286553 FORWARD LENGTH=120          122   3e-29

>AT2G19740.1 | chr2:8513577-8514346 FORWARD LENGTH=120
          Length = 119

 Score =  127 bits (320), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 64/96 (66%), Positives = 72/96 (75%)

Query: 3   LINSTFKKKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKAIWTNGXXXXXXXXXXXXXXXX 62
           L + TFKKKAPNAIKEIRKFA KAMGT D+R+DVKLNK IW+ G                
Sbjct: 24  LHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKR 83

Query: 63  NDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVEDEE 98
           ND+EDAKEE +SLVTVAEIPAEGL GLGTKV+E+EE
Sbjct: 84  NDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119



>AT5G56710.1 | chr5:22944003-22944767 REVERSE LENGTH=120
          Length = 119

 Score =  125 bits (313), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 62/96 (64%), Positives = 71/96 (73%)

Query: 3   LINSTFKKKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKAIWTNGXXXXXXXXXXXXXXXX 62
           L   TFKKKAP AIKEIRKFA+KAMGT D+R+DVKLNK IW+ G                
Sbjct: 24  LHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKR 83

Query: 63  NDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVEDEE 98
           ND+EDAKEE +SLVTVAEIPAEGL GLGTKV+E+E+
Sbjct: 84  NDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119



>AT4G26230.1 | chr4:13286026-13286553 FORWARD LENGTH=120
          Length = 119

 Score =  122 bits (307), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 71/96 (73%)

Query: 3   LINSTFKKKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKAIWTNGXXXXXXXXXXXXXXXX 62
           L + TFKKKAP AIKEIRKFA+K MGT D+R+DVKLNK IW+ G                
Sbjct: 24  LHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKR 83

Query: 63  NDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVEDEE 98
           ND+EDAKEE +SLVTVAEIPAEGL GLGTK++E+E+
Sbjct: 84  NDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIEEED 119



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.131    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,700,343
Number of extensions: 47699
Number of successful extensions: 79
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 3
Length of query: 98
Length of database: 11,106,569
Length adjustment: 68
Effective length of query: 30
Effective length of database: 9,242,281
Effective search space: 277268430
Effective search space used: 277268430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 104 (44.7 bits)