Os08g0505300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L31.
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Os08g0505300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L31.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.38 | 0.374 | 12.1 | 1.63 | 0.7 | -1.9 | 0.499 | -0.461 | 0.261 | 20.1 | 28.33 | 2798 | -- | -- |
| 63.52 | 0.371 | 12.1 | 1.54 | 0.69 | -1.85 | 0.492 | -- | 0.249 | 20.1 | 29.3 | 2763 | -- | -- |
| 64.13 | 0.373 | 12.1 | 1.61 | 0.703 | -1.89 | -- | -0.422 | 0.261 | 20.1 | 28.47 | 2800 | -- | -- |
| 64.26 | 0.373 | 12.1 | 1.53 | 0.693 | -1.85 | -- | -- | 0.251 | 20.1 | 29.3 | 2762 | -- | -- |
| 80.06 | 0.417 | 12 | 1.52 | -- | -2.07 | -- | 0.0767 | 0.279 | -- | 37.76 | 2173 | -- | -- |
| 131.68 | 0.538 | 12 | 2.32 | 0.704 | -- | 0.491 | -- | 0.712 | 21 | -- | -- | -- | -- |
| 132.51 | 0.539 | 12 | 2.3 | 0.702 | -- | -- | -- | 0.711 | 21 | -- | -- | -- | -- |
| 79.15 | 0.414 | 12.1 | 1.52 | -- | -2.09 | -- | -- | 0.257 | -- | 30.81 | 2164 | -- | -- |
| 85.26 | 0.43 | 12.2 | -- | 0.681 | -2.2 | -- | -- | -0.202 | 20.7 | 58.51 | 47520 | -- | -- |
| 160.78 | 0.592 | 12 | 2.3 | -- | -- | -- | -- | 0.707 | -- | -- | -- | -- | -- |
| 272.05 | 0.772 | 12 | -- | 0.7 | -- | -- | -- | 0.455 | 21.2 | -- | -- | -- | -- |
| 102.84 | 0.472 | 12.2 | -- | -- | -2.43 | -- | -- | -0.118 | -- | 24.17 | 39715 | -- | -- |
| 300.51 | 0.809 | 12 | -- | -- | -- | -- | -- | 0.452 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.97 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 11 | 61.69 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 174 | 64.01 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 215 | 64.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 16 |
| 225 | 64.35 | temperature | 15 | 4320 | > th | dose dependent | sin | 14 | NA |
| 282 | 64.70 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 595 | 65.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 787 | 66.12 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 835 | 66.21 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 945 | 66.38 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |