BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0505300 Os08g0505300|D29722
         (66 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56710.1  | chr5:22944003-22944767 REVERSE LENGTH=120           81   9e-17
AT4G26230.1  | chr4:13286026-13286553 FORWARD LENGTH=120           81   1e-16
AT2G19740.1  | chr2:8513577-8514346 FORWARD LENGTH=120             80   3e-16

>AT5G56710.1 | chr5:22944003-22944767 REVERSE LENGTH=120
          Length = 119

 Score = 81.3 bits (199), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 45/66 (68%)

Query: 1   RVDVKLNKHIWSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEVPPEGLKGLGTK 60
           RVDVKLNK IWS GI               ND+EDAKEE +SLVTVAE+P EGL GLGTK
Sbjct: 54  RVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTK 113

Query: 61  VVDETD 66
           V++E D
Sbjct: 114 VIEEED 119



>AT4G26230.1 | chr4:13286026-13286553 FORWARD LENGTH=120
          Length = 119

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 45/66 (68%)

Query: 1   RVDVKLNKHIWSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEVPPEGLKGLGTK 60
           RVDVKLNK IWS GI               ND+EDAKEE +SLVTVAE+P EGL GLGTK
Sbjct: 54  RVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTK 113

Query: 61  VVDETD 66
           +++E D
Sbjct: 114 IIEEED 119



>AT2G19740.1 | chr2:8513577-8514346 FORWARD LENGTH=120
          Length = 119

 Score = 79.7 bits (195), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 44/64 (68%)

Query: 1   RVDVKLNKHIWSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEVPPEGLKGLGTK 60
           RVDVKLNK IWS GI               ND+EDAKEE +SLVTVAE+P EGL GLGTK
Sbjct: 54  RVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTK 113

Query: 61  VVDE 64
           V++E
Sbjct: 114 VIEE 117



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.306    0.131    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,207,798
Number of extensions: 29402
Number of successful extensions: 37
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 3
Length of query: 66
Length of database: 11,106,569
Length adjustment: 39
Effective length of query: 27
Effective length of database: 10,037,345
Effective search space: 271008315
Effective search space used: 271008315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 104 (44.7 bits)