BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0711900 Os02g0711900|Os02g0711900
         (249 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0711900  Conserved hypothetical protein                      295   3e-80
Os06g0500300  Conserved hypothetical protein                      112   2e-25

>Os02g0711900 Conserved hypothetical protein
          Length = 249

 Score =  295 bits (754), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 162/249 (65%), Positives = 162/249 (65%)

Query: 1   MGCYHLGKFVSKALGKCNGRERGWREERLDYAMAYPPGPPTETYYMRPVARTVTFSAANS 60
           MGCYHLGKFVSKALGKCNGRERGWREERLDYAMAYPPGPPTETYYMRPVARTVTFSAANS
Sbjct: 1   MGCYHLGKFVSKALGKCNGRERGWREERLDYAMAYPPGPPTETYYMRPVARTVTFSAANS 60

Query: 61  VYVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           VYVI                                                        
Sbjct: 61  VYVIPPAEPPHQQSPEPQPQTPPPPAQQQQHGPEHEHHQAQPQPQQEPPPPAQDAPPAEP 120

Query: 121 XXXKRGKNKKSGRVRFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPNAGAEHAPARHAT 180
              KRGKNKKSGRVRFG                            APNAGAEHAPARHAT
Sbjct: 121 KPPKRGKNKKSGRVRFGPEPPPPEQQQQQQQQQQPPQQQEQTTQQAPNAGAEHAPARHAT 180

Query: 181 SAPPGYFRYTPSPLPRWEAATPRRHEYFSGEYRYSYPTPVREGIYRMATDANRLTTIFSE 240
           SAPPGYFRYTPSPLPRWEAATPRRHEYFSGEYRYSYPTPVREGIYRMATDANRLTTIFSE
Sbjct: 181 SAPPGYFRYTPSPLPRWEAATPRRHEYFSGEYRYSYPTPVREGIYRMATDANRLTTIFSE 240

Query: 241 ENPNACAIM 249
           ENPNACAIM
Sbjct: 241 ENPNACAIM 249



>Os06g0500300 Conserved hypothetical protein
          Length = 262

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/69 (78%), Positives = 58/69 (84%), Gaps = 4/69 (5%)

Query: 185 GYFRYTPSPLPRWE----AATPRRHEYFSGEYRYSYPTPVREGIYRMATDANRLTTIFSE 240
           G + Y PSPL RWE    A TPRRHEYFSGEYR+ YPTPVREGIY +ATDANRLTTIFSE
Sbjct: 194 GRYAYAPSPLARWEMLGSAGTPRRHEYFSGEYRWCYPTPVREGIYSLATDANRLTTIFSE 253

Query: 241 ENPNACAIM 249
           ENPNACAI+
Sbjct: 254 ENPNACAIV 262



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,924,061
Number of extensions: 280072
Number of successful extensions: 831
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 829
Number of HSP's successfully gapped: 3
Length of query: 249
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 151
Effective length of database: 11,918,829
Effective search space: 1799743179
Effective search space used: 1799743179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)