BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0708300 Os02g0708300|AK066348
         (77 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0708300  Conserved hypothetical protein                      132   4e-32
Os01g0106800  Similar to RING-box protein 1A (Regulator of c...    71   2e-13
AK099287                                                           71   2e-13

>Os02g0708300 Conserved hypothetical protein
          Length = 77

 Score =  132 bits (333), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 65/77 (84%)

Query: 1  MDKGDVAVAVPPSIXXXXXXXXXXXXRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCE 60
          MDKGDVAVAVPPSI            RFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCE
Sbjct: 1  MDKGDVAVAVPPSIAGASSSGAKKGKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCE 60

Query: 61 HARRWPSARPRSDLLFL 77
          HARRWPSARPRSDLLFL
Sbjct: 61 HARRWPSARPRSDLLFL 77



>Os01g0106800 Similar to RING-box protein 1A (Regulator of cullins 1a) (dRbx1)
          Length = 126

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/33 (96%), Positives = 33/33 (100%)

Query: 27 RFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLC 59
          RFEIKKWNAV+LWAWDIVVDNCAICRNHIMDLC
Sbjct: 39 RFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 71



>AK099287 
          Length = 126

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/33 (96%), Positives = 33/33 (100%)

Query: 27 RFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLC 59
          RFEIKKWNAV+LWAWDIVVDNCAICRNHIMDLC
Sbjct: 39 RFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 71



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.138    0.494 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,711,652
Number of extensions: 75486
Number of successful extensions: 140
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 3
Length of query: 77
Length of database: 17,035,801
Length adjustment: 48
Effective length of query: 29
Effective length of database: 14,529,529
Effective search space: 421356341
Effective search space used: 421356341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)