BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0703800 Os02g0703800|AK120025
         (269 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0703800  Conserved hypothetical protein                      446   e-125
Os01g0530500  Protein of unknown function DUF295 family protein    94   9e-20
Os08g0410266  Cyclin-like F-box domain containing protein          89   3e-18

>Os02g0703800 Conserved hypothetical protein
          Length = 269

 Score =  446 bits (1146), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/269 (83%), Positives = 225/269 (83%)

Query: 1   MLALPDRTFYSLPNSAFXXXXXXXXXXXXXXXAQSSCGEWLVFQRRDGAYTLVSPFSTAN 60
           MLALPDRTFYSLPNSAF               AQSSCGEWLVFQRRDGAYTLVSPFSTAN
Sbjct: 1   MLALPDRTFYSLPNSAFRRLPLHLHRHQQLPHAQSSCGEWLVFQRRDGAYTLVSPFSTAN 60

Query: 61  TMVLPRMXXXXXXXXXXXXXLQKLVVCSPTLVAAVVGKRPSQLLLCRPGSASWSCRHDRL 120
           TMVLPRM             LQKLVVCSPTLVAAVVGKRPSQLLLCRPGSASWSCRHDRL
Sbjct: 61  TMVLPRMPTDPPVTHDTPPPLQKLVVCSPTLVAAVVGKRPSQLLLCRPGSASWSCRHDRL 120

Query: 121 QALEIQDMVSYQGKLHALVNXXXXXXXXXXXXXXXXHAGGEPTVSSVDCLVRISPGRRTE 180
           QALEIQDMVSYQGKLHALVN                HAGGEPTVSSVDCLVRISPGRRTE
Sbjct: 121 QALEIQDMVSYQGKLHALVNSGDLLSISISEDDDGSHAGGEPTVSSVDCLVRISPGRRTE 180

Query: 181 PPLYLVESDGALLMVRKENHSTREGSYSDDEQSNVILYPDDDDSYVPLYSAEQIELQTKF 240
           PPLYLVESDGALLMVRKENHSTREGSYSDDEQSNVILYPDDDDSYVPLYSAEQIELQTKF
Sbjct: 181 PPLYLVESDGALLMVRKENHSTREGSYSDDEQSNVILYPDDDDSYVPLYSAEQIELQTKF 240

Query: 241 EVFAADMAGSRWRKVRSVGGDRVPFVGRW 269
           EVFAADMAGSRWRKVRSVGGDRVPFVGRW
Sbjct: 241 EVFAADMAGSRWRKVRSVGGDRVPFVGRW 269



>Os01g0530500 Protein of unknown function DUF295 family protein
          Length = 265

 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 36/202 (17%)

Query: 81  LQKLVVCSPTLVAAVVGK-RPSQLLLCRPGSASWSCR-HDRLQALEIQDMVSYQGKLHAL 138
           + KL++C P+LVAA+VG    SQ+L+C+PG  SWS R +D ++    QDM  YQGKL+A+
Sbjct: 11  ISKLILCLPSLVAAIVGDGHISQILVCKPGGLSWSVRAYDMVR--NFQDMAFYQGKLYAI 68

Query: 139 VNXXXXXXXXXXXXXXXXHAGGEPTVSSVDCLVRISPGRRT-----------EPPLYLVE 187
            N                 + G+P VS +   ++  P                  LYLVE
Sbjct: 69  ANDDEDLLVVNISQD---QSTGDPQVSKIGQAIKGEPFHSVWHEFGTMDILANKKLYLVE 125

Query: 188 SDGALLMVRKENHS-TREGSYSDDEQSNVILYPDDDDSYVPLYSAEQIELQTKFEVFAAD 246
           S G+LLM+R++    +++ S +D E S  I                 +    +FEVF AD
Sbjct: 126 SHGSLLMIRRKIWCWSKQASDTDPEASRPI-----------------VAGPNEFEVFKAD 168

Query: 247 MAGSRWRKVRSVGGDRVPFVGR 268
              SRW K+ ++G ++V F+GR
Sbjct: 169 FEQSRWVKMTTLGDEQVLFLGR 190



>Os08g0410266 Cyclin-like F-box domain containing protein
          Length = 638

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 117/282 (41%), Gaps = 77/282 (27%)

Query: 35  SSCGEWLVFQRRDGAYTLVSPFSTANTMVLPRMXXX------------------------ 70
           ++CG WLVF   DG + LV PF+ A T+ LP +                           
Sbjct: 96  AACGRWLVFPHDDGCF-LVDPFAGA-TVTLPALSRVRLRPPNAVASYVNVGIAGRNAHVS 153

Query: 71  --------XXXXXXXXXXLQKLVVCSPTLVAAVVGK------RPSQLLLCRPGSASWSCR 116
                             + KL++CS  LVAA +G       R SQ+L+C+PG++SWS R
Sbjct: 154 MFYPHATWMHIKTSDKMPINKLLLCSQNLVAAFIGSSLANAGRNSQILVCQPGASSWSVR 213

Query: 117 -HDRLQALEIQDMVSYQGKLHAL--------VNXXXXXXXXXXXXXXXXHA-GGEPTVSS 166
            +D+ +  E  DM  Y+GKL+AL        VN                    G+PT SS
Sbjct: 214 AYDKCKLFE--DMAFYRGKLYALAHDENLLVVNISQDPNTGDPQISQIGQVIKGDPTWSS 271

Query: 167 VDCLVRISPGRRTEPPLYLVESDGALLMVRKENHSTREGSYSDDEQSNVILYPDDDDSYV 226
           V            +  LYLVES G LLMVR++      G                  + V
Sbjct: 272 VLITDDDDTSTTDKKKLYLVESCGVLLMVRRKVCCRVVGK-----------------TVV 314

Query: 227 PLYSAEQIELQTKFEVFAADMAGSRWRKVRSVGGDRVPFVGR 268
           P         Q +FEVF AD+  SRW  V ++G D++ F+GR
Sbjct: 315 P--------GQNEFEVFKADLENSRWVNVTTLGVDQMVFLGR 348



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,332,709
Number of extensions: 286680
Number of successful extensions: 760
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 754
Number of HSP's successfully gapped: 3
Length of query: 269
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 170
Effective length of database: 11,866,615
Effective search space: 2017324550
Effective search space used: 2017324550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)