BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0702800 Os02g0702800|AK071767
         (267 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0702800  Similar to Syntaxin 22 (AtSYP22) (AtVAM3)           369   e-102
Os01g0254900  Similar to Syntaxin 22 (AtSYP22) (AtVAM3)           185   3e-47
Os06g0223000  Syntaxin, N-terminal domain containing protein       79   5e-15

>Os02g0702800 Similar to Syntaxin 22 (AtSYP22) (AtVAM3)
          Length = 267

 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/245 (77%), Positives = 189/245 (77%)

Query: 1   MSFADLEXXXXXXXXXXXXXXXXXXLVFQITTAVASYRRLLNSLGTPKDTPALRDQLQKT 60
           MSFADLE                  LVFQITTAVASYRRLLNSLGTPKDTPALRDQLQKT
Sbjct: 1   MSFADLEAGAVRAPRRARGPDATRALVFQITTAVASYRRLLNSLGTPKDTPALRDQLQKT 60

Query: 61  SHNILQLAKDAKEKLRRAAEADKNADTSADKRVADMKLAKDFATTMEEYGKLQNLAIQRE 120
           SHNILQLAKDAKEKLRRAAEADKNADTSADKRVADMKLAKDFATTMEEYGKLQNLAIQRE
Sbjct: 61  SHNILQLAKDAKEKLRRAAEADKNADTSADKRVADMKLAKDFATTMEEYGKLQNLAIQRE 120

Query: 121 MAYKPVVPQTSQPNYTTGGIEARDSGKIPEQHALLAESKRQEVLQLDNEIVFNXXXXXXX 180
           MAYKPVVPQTSQPNYTTGGIEARDSGKIPEQHALLAESKRQEVLQLDNEIVFN       
Sbjct: 121 MAYKPVVPQTSQPNYTTGGIEARDSGKIPEQHALLAESKRQEVLQLDNEIVFNEAIIEER 180

Query: 181 XXXXXXXXXXXXXVHEAFKDLATLVHIQGVTIEEIDTNIENXXXXXXXXXXXXXXXXXXQ 240
                        VHEAFKDLATLVHIQGVTIEEIDTNIEN                  Q
Sbjct: 181 EQAIQDIQQQIGEVHEAFKDLATLVHIQGVTIEEIDTNIENSAAATKEAKTELAKASKTQ 240

Query: 241 KSNSS 245
           KSNSS
Sbjct: 241 KSNSS 245



>Os01g0254900 Similar to Syntaxin 22 (AtSYP22) (AtVAM3)
          Length = 280

 Score =  185 bits (470), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 99/219 (45%), Positives = 130/219 (59%)

Query: 27  VFQITTAVASYRRLLNSLGTPKDTPALRDQLQKTSHNILQLAKDAKEKLRRAAEADKNAD 86
           VFQI TAV++++RL+N+LGTPKDTP LR+++ KT  +I QL KD  EKL++A+EAD   +
Sbjct: 40  VFQINTAVSTFQRLVNTLGTPKDTPDLRERIHKTRQHITQLVKDTSEKLKQASEADHRVE 99

Query: 87  TSADKRVADMKLAKDFATTMEEYGKLQNLAIQREMAYKPVVPQTSQPNYTTGGIEARDSG 146
            SA K++AD KLAKDF   ++E+ K Q LA++RE AY P + Q   P           + 
Sbjct: 100 VSASKKIADAKLAKDFQAVLKEFQKAQRLAVEREAAYAPFISQAGLPQSYNSSEVNNGAD 159

Query: 147 KIPEQHALLAESKRQEVLQLDNEIVFNXXXXXXXXXXXXXXXXXXXXVHEAFKDLATLVH 206
           K+ EQ   L ES+RQE++ LDNEIVFN                    V+E FKDLA LVH
Sbjct: 160 KLAEQRTALLESRRQELVFLDNEIVFNEAVIEERDQGIQEIQHQITEVNEIFKDLAVLVH 219

Query: 207 IQGVTIEEIDTNIENXXXXXXXXXXXXXXXXXXQKSNSS 245
            QG  I++IDT+IEN                  QKSNSS
Sbjct: 220 DQGQMIDDIDTHIENAVIATTQAKGQLSKAAKTQKSNSS 258



>Os06g0223000 Syntaxin, N-terminal domain containing protein
          Length = 277

 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 92/196 (46%), Gaps = 7/196 (3%)

Query: 27  VFQITTAVASYRRLLNSLGTPKDTPALRDQLQKTSHNILQLAKDAKEKLRRAAEADKNAD 86
           VFQ+ T V + R +  +LGTP+DTP+LR +L+ T   I +LA    + LR+AA A  + +
Sbjct: 29  VFQLNTKVEALRYMAGALGTPRDTPSLRGRLRGTRAGIKRLATSTSQALRQAAAAADDDE 88

Query: 87  TSADKRVADMKLAKDFATTMEEYGKLQNLAIQREMAYKPVVPQTSQPNYTTGGIEARDSG 146
           + +    +  KLA DF   + EY K++      E        + S P  T G     ++G
Sbjct: 89  SVS----SCSKLAMDFEAAVNEYQKIERRIAAVERQETAAAARRSPPPPTPGFNHINNNG 144

Query: 147 --KIPEQHALLAESKRQEVLQLDNEIVFNXXXXXXXXXXXXXXXXXXXXVHEAFKDLATL 204
               PEQ        R ++  LD+EI  +                    +HE F+DLA L
Sbjct: 145 DHTFPEQKQTQLAVLR-DINLLDSEIELHEAIIAEREQGILEVQQEIADIHEIFRDLAVL 203

Query: 205 VHIQGVTIEEIDTNIE 220
           VH QG  IE +  NIE
Sbjct: 204 VHDQGECIEIVTANIE 219



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.126    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,217,714
Number of extensions: 172034
Number of successful extensions: 463
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 3
Length of query: 267
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 168
Effective length of database: 11,866,615
Effective search space: 1993591320
Effective search space used: 1993591320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)