Os06g0223000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Syntaxin, N-terminal domain containing protein.
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Os06g0223000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Syntaxin, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 202.18 | 0.668 | 5.49 | 0.51 | 1.86 | 1.31 | 1.06 | 1.5 | -0.135 | 8.88 | 22.3 | 1159 | -- | -- |
| 207.44 | 0.671 | 5.45 | 1 | 1.82 | 1.32 | 1.34 | -- | -0.00608 | 8.81 | 22.3 | 1040 | -- | -- |
| 202.42 | 0.663 | 5.5 | 0.417 | 1.71 | 1.28 | -- | 1.86 | -0.159 | 8.96 | 22.2 | 869 | -- | -- |
| 212.11 | 0.678 | 5.46 | 0.98 | 1.73 | 1.28 | -- | -- | -0.0284 | 8.93 | 22.29 | 869 | -- | -- |
| 364.41 | 0.889 | 5.52 | 0.574 | -- | 1.66 | -- | 1.68 | -0.0214 | -- | 22.3 | 801 | -- | -- |
| 275.51 | 0.778 | 5.54 | 0.542 | 1.96 | -- | 1.23 | -- | -0.457 | 9.16 | -- | -- | -- | -- |
| 280.86 | 0.785 | 5.54 | 0.586 | 1.95 | -- | -- | -- | -0.456 | 9.19 | -- | -- | -- | -- |
| 339 | 0.858 | 5.41 | 1.15 | -- | 1.82 | -- | -- | 0.278 | -- | 24.7 | 677 | -- | -- |
| 238.04 | 0.719 | 5.44 | -- | 1.79 | 1.19 | -- | -- | -0.0914 | 8.9 | 22.3 | 883 | -- | -- |
| 502.33 | 1.05 | 5.59 | 0.579 | -- | -- | -- | -- | -0.446 | -- | -- | -- | -- | -- |
| 289.92 | 0.796 | 5.55 | -- | 1.95 | -- | -- | -- | -0.521 | 9.17 | -- | -- | -- | -- |
| 372.88 | 0.899 | 5.47 | -- | -- | 1.63 | -- | -- | 0.0634 | -- | 24.8 | 671 | -- | -- |
| 511.19 | 1.06 | 5.61 | -- | -- | -- | -- | -- | -0.51 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 208.65 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 3 | 209.09 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 6 | 209.50 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 12 | 209.74 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 35 | 210.52 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 42 | 210.67 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 72 | 211.32 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 10 | 18 |
| 123 | 212.18 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 22 |
| 128 | 212.24 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 149 | 212.45 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 159 | 212.57 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 160 | 212.58 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 163 | 212.60 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 196 | 212.92 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 223 | 213.05 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 229 | 213.07 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 240 | 213.16 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 316 | 213.84 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 341 | 214.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 356 | 214.15 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 467 | 214.92 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 507 | 215.14 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 547 | 215.45 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 574 | 215.67 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 582 | 215.71 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 591 | 215.81 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 641 | 216.29 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 650 | 216.38 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 651 | 216.38 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 743 | 217.07 | temperature | 10.0 | 270 | > th | dose dependent | no | NA | NA |
| 814 | 217.50 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 818 | 217.52 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 883 | 218.03 | temperature | 20.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 911 | 218.20 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 944 | 218.42 | temperature | 10.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 1000 | 218.71 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 23 |