Os01g0254900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Syntaxin 22 (AtSYP22) (AtVAM3).
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Os01g0254900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Syntaxin 22 (AtSYP22) (AtVAM3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.49 | 0.299 | 13.3 | -1.2 | 0.468 | 0.574 | -0.222 | -0.242 | -0.382 | 7.61 | 21.8 | 1139 | -- | -- |
| 40.65 | 0.297 | 13.3 | -1.14 | 0.469 | 0.59 | -0.191 | -- | -0.367 | 7.59 | 21.76 | 1137 | -- | -- |
| 40.58 | 0.297 | 13.3 | -1.19 | 0.467 | 0.565 | -- | -0.218 | -0.38 | 7.59 | 21.93 | 1139 | -- | -- |
| 40.74 | 0.297 | 13.3 | -1.14 | 0.469 | 0.581 | -- | -- | -0.365 | 7.61 | 21.83 | 1133 | -- | -- |
| 51.19 | 0.333 | 13.3 | -1.19 | -- | 0.582 | -- | -0.233 | -0.38 | -- | 22 | 1382 | -- | -- |
| 52.57 | 0.34 | 13.2 | -0.909 | 0.45 | -- | -0.202 | -- | -0.184 | 7.02 | -- | -- | -- | -- |
| 52.68 | 0.34 | 13.2 | -0.912 | 0.45 | -- | -- | -- | -0.184 | 7.03 | -- | -- | -- | -- |
| 51.36 | 0.334 | 13.3 | -1.13 | -- | 0.579 | -- | -- | -0.362 | -- | 21.9 | 1380 | -- | -- |
| 70.08 | 0.39 | 13.2 | -- | 0.475 | 0.317 | -- | -- | -0.185 | 7.6 | 22.3 | 916 | -- | -- |
| 63.32 | 0.372 | 13.2 | -0.904 | -- | -- | -- | -- | -0.175 | -- | -- | -- | -- | -- |
| 74.63 | 0.404 | 13.2 | -- | 0.44 | -- | -- | -- | -0.082 | 7.16 | -- | -- | -- | -- |
| 80.98 | 0.419 | 13.2 | -- | -- | 0.269 | -- | -- | -0.191 | -- | 22.38 | 1253 | -- | -- |
| 84.85 | 0.43 | 13.2 | -- | -- | -- | -- | -- | -0.0752 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.39 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 6 | 39.51 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 17 | 39.77 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 31 | 40.03 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 32 | 40.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 16 |
| 43 | 40.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 13 |
| 92 | 40.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 119 | 40.42 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 125 | 40.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 127 | 40.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 214 | 40.56 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 254 | 40.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 582 | 40.90 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 593 | 40.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 898 | 41.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 900 | 41.23 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 906 | 41.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 954 | 41.28 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |