BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0254900 Os01g0254900|AK068204
(280 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G46860.1 | chr5:19012342-19013795 REVERSE LENGTH=269 335 2e-92
AT4G17730.2 | chr4:9865351-9866717 FORWARD LENGTH=263 293 6e-80
AT5G16830.1 | chr5:5533076-5535152 REVERSE LENGTH=280 280 8e-76
AT1G32270.1 | chr1:11642593-11644962 FORWARD LENGTH=417 203 7e-53
AT5G26980.1 | chr5:9488724-9490604 REVERSE LENGTH=323 55 3e-08
AT3G05710.2 | chr3:1685262-1687229 FORWARD LENGTH=332 55 4e-08
AT3G03800.1 | chr3:969314-971460 FORWARD LENGTH=307 53 2e-07
AT1G61290.1 | chr1:22605188-22606216 FORWARD LENGTH=304 50 1e-06
AT4G02195.1 | chr4:970099-972192 REVERSE LENGTH=324 50 1e-06
>AT5G46860.1 | chr5:19012342-19013795 REVERSE LENGTH=269
Length = 268
Score = 335 bits (858), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 174/258 (67%), Positives = 195/258 (75%), Gaps = 12/258 (4%)
Query: 1 MSFQDLEXXXXXXXXXXXXXXXXXXXXXXXXXSQAVASGVFQINTAVSTFQRLVNTLGTP 60
MSFQDLE +QAVASG+FQINT VSTFQRLVNTLGTP
Sbjct: 1 MSFQDLESGRGRSTRKFNGGRQDS--------TQAVASGIFQINTGVSTFQRLVNTLGTP 52
Query: 61 KDTPDLRERIHKTRQHITQLVKDTSEKLKQASEADHRVEVSASKKIADAKLAKDFQAVLK 120
KDTP+LRE++HKTR HI QLVKDTS KLK+ASE DH+ V+ SKKIADAKLA+DFQAVLK
Sbjct: 53 KDTPELREKLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQAVLK 112
Query: 121 EFQKAQRLAVEREAAYAPFISQAGLPQSYNSSEVNNGADKLAEQRTALLESRRQELVFLD 180
EFQKAQ+ A ERE Y PF+ Q+ LP SY + EV DK+ EQR L ES+RQELV LD
Sbjct: 113 EFQKAQQTAAERETTYTPFVPQSALPSSYTAGEV----DKVPEQRAQLQESKRQELVLLD 168
Query: 181 NEIVFNEAVIEERDQGIQEIQHQITEVNEIFKDLAVLVHDQGQMIDDIDTHIENAVIATT 240
NEI FNEAVIEER+QGIQEI QI EVNEIFKDLAVLV+DQG MIDDI THI+N+ AT+
Sbjct: 169 NEIAFNEAVIEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHIDNSRAATS 228
Query: 241 QAKGQLSKAAKTQKSNSS 258
Q K QL +AAKTQKSNSS
Sbjct: 229 QGKSQLVQAAKTQKSNSS 246
>AT4G17730.2 | chr4:9865351-9866717 FORWARD LENGTH=263
Length = 262
Score = 293 bits (751), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 162/246 (65%), Positives = 182/246 (73%), Gaps = 3/246 (1%)
Query: 1 MSFQDLEXXXXXXXXXXXXXXXXXXXXXXXXXSQAVASGVFQINTAVSTFQRLVNTLGTP 60
MSFQDLE +Q VASG+FQINT+VSTF RLVNTLGTP
Sbjct: 1 MSFQDLEAGRGRSLASSRNINGGGSRQDT---TQDVASGIFQINTSVSTFHRLVNTLGTP 57
Query: 61 KDTPDLRERIHKTRQHITQLVKDTSEKLKQASEADHRVEVSASKKIADAKLAKDFQAVLK 120
KDTP+LRE++HKTR +I QLVKDTS KLK+ASE DH+ V+ KKI DAKLAKDFQAVLK
Sbjct: 58 KDTPELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLAKDFQAVLK 117
Query: 121 EFQKAQRLAVEREAAYAPFISQAGLPQSYNSSEVNNGADKLAEQRTALLESRRQELVFLD 180
EFQKAQRLA ERE YAP + + LP SY SSE++ DK EQR L+ES+RQELV LD
Sbjct: 118 EFQKAQRLAAERETVYAPLVHKPSLPSSYTSSEIDVNGDKHPEQRALLVESKRQELVLLD 177
Query: 181 NEIVFNEAVIEERDQGIQEIQHQITEVNEIFKDLAVLVHDQGQMIDDIDTHIENAVIATT 240
NEI FNEAVIEER+QGIQEIQ QI EV+EIFKDLAVLVHDQG MIDDI THI+N+ AT
Sbjct: 178 NEIAFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVLVHDQGNMIDDIGTHIDNSYAATA 237
Query: 241 QAKGQL 246
Q K L
Sbjct: 238 QGKSHL 243
>AT5G16830.1 | chr5:5533076-5535152 REVERSE LENGTH=280
Length = 279
Score = 280 bits (715), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 144/258 (55%), Positives = 193/258 (74%), Gaps = 1/258 (0%)
Query: 1 MSFQDLEXXXXXXXXXXXXXXXXXXXXXXXXXSQAVASGVFQINTAVSTFQRLVNTLGTP 60
MSFQDLE SQ VA+G+F+I+TAV++F RLVN++GTP
Sbjct: 1 MSFQDLEAGTRSPAPNRFTGGRQQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNSIGTP 60
Query: 61 KDTPDLRERIHKTRQHITQLVKDTSEKLKQASEADHRVEVSASKKIADAKLAKDFQAVLK 120
KDT +LR+++ KTR I++LVK+TS KLK+ASEAD S KKIADAKLAKDFQ+VLK
Sbjct: 61 KDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQSVLK 120
Query: 121 EFQKAQRLAVEREAAYAPFISQAGLPQSYNSSEVNNGADKLAEQRTALLESRRQELVFLD 180
EFQKAQRLA ERE Y P +++ +P SYN+ E++ + ++++Q+ LL+SRRQE+VFLD
Sbjct: 121 EFQKAQRLAAEREITYTPVVTKE-IPTSYNAPELDTESLRISQQQALLLQSRRQEVVFLD 179
Query: 181 NEIVFNEAVIEERDQGIQEIQHQITEVNEIFKDLAVLVHDQGQMIDDIDTHIENAVIATT 240
NEI FNEA+IEER+QGI+EI+ QI +VN +FKDLA++V+ QG ++DDI ++++N+ ATT
Sbjct: 180 NEITFNEAIIEEREQGIREIEDQIRDVNGMFKDLALMVNHQGNIVDDISSNLDNSHAATT 239
Query: 241 QAKGQLSKAAKTQKSNSS 258
QA QL KAAKTQ+SNSS
Sbjct: 240 QATVQLRKAAKTQRSNSS 257
>AT1G32270.1 | chr1:11642593-11644962 FORWARD LENGTH=417
Length = 416
Score = 203 bits (517), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 121/231 (52%), Positives = 152/231 (65%), Gaps = 21/231 (9%)
Query: 38 SGVFQINTAVS-TFQRLVNTLGTPKDTPDLRERI--------------HKTRQHITQLVK 82
+GV++I+ +S F+ +V L T P +R + HK I QLVK
Sbjct: 106 TGVYRIDVKLSINFRVMVLHLVTWPMKPVVRCHLKIPLALGSSNSTGGHKKMLLIGQLVK 165
Query: 83 DTSEKLKQASEADHRVEVSASKKIADAKLAKDFQAVLKEFQKAQRLAVEREAAYAPFISQ 142
DTS L++ASE DHR +V+ SKKIADAKLAKDF+A LKEFQKAQ + VERE +Y PF +
Sbjct: 166 DTSANLREASETDHRRDVAQSKKIADAKLAKDFEAALKEFQKAQHITVERETSYIPFDPK 225
Query: 143 AGLPQSYNSSEVNNGADKLAEQRTALLESRRQELVFLDNEIVFNEAVIEERDQGIQEIQH 202
S++SSEV+ G D+ EQR L+ESRRQE+V LDNEI NEA IE R+QGIQE++H
Sbjct: 226 G----SFSSSEVDIGYDRSQEQRV-LMESRRQEIVLLDNEISLNEARIEAREQGIQEVKH 280
Query: 203 QITEVNEIFKDLAVLVHDQGQMIDDIDTHIENAVIATTQAKGQLSKAAKTQ 253
QI+EV E+FKDLAV+V QG IDDID I+N A Q K L KA+ TQ
Sbjct: 281 QISEVMEMFKDLAVMVDHQG-TIDDIDEKIDNLRSAAAQGKSHLVKASNTQ 330
>AT5G26980.1 | chr5:9488724-9490604 REVERSE LENGTH=323
Length = 322
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 27/192 (14%)
Query: 70 IHKTRQHITQLVKDTSEKLKQASEADHRVEVSASKKIADAKLAKDFQAVLKEFQKAQ--- 126
I Q IT L+K + ++L++ S A E S +K LA D Q + E +K Q
Sbjct: 122 IESLTQEITFLLKKSEKQLQRLS-ASGPSEDSNVRKNVQRSLATDLQLLSMELRKKQSTY 180
Query: 127 --RLAVEREAAYAPFISQAGLPQSYNSSEVNNGADKLAEQRTALLESRRQELVFLDNEIV 184
RL ++E + L ++ E ++ D L E + + +I
Sbjct: 181 LKRLRQQKEDGMD---LEMNLSRNRYRPEEDDFGDMLNEHQMS--------------KIK 223
Query: 185 FNEAVIEERDQGIQEIQHQITEVNEIFKDLAVLVHDQGQMIDDIDTHIENAVIATTQAKG 244
+E V ER++ IQ++ + ++ +I KDL+ LV DQG ++D ID +IEN +ATT G
Sbjct: 224 KSEEVSVEREKEIQQVVESVNDLAQIMKDLSALVIDQGTIVDRIDYNIEN--VATTVEDG 281
Query: 245 --QLSKAAKTQK 254
QL KA +TQ+
Sbjct: 282 LKQLQKAERTQR 293
>AT3G05710.2 | chr3:1685262-1687229 FORWARD LENGTH=332
Length = 331
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 28/193 (14%)
Query: 70 IHKTRQHITQLVKDTSEKLKQASEADHRVEVSASKKIADAKLAKDFQAVLKEFQKAQ--- 126
I Q +T L+K + ++L++ S A E S +K LA D Q + E +K Q
Sbjct: 130 IETLTQEVTFLLKKSEKQLQRLSAAGPS-EDSNVRKNVQRSLATDLQNLSMELRKKQSTY 188
Query: 127 --RLAVEREAAYAPFISQAGLPQSYNSSEVNNGADKLAEQRTALLESRRQELVFLDNE-- 182
RL +++E A L + N S D ++VF +++
Sbjct: 189 LKRLRLQKEDG-------ADLEMNLNGSRYKAEDDDF------------DDMVFSEHQMS 229
Query: 183 -IVFNEAVIEERDQGIQEIQHQITEVNEIFKDLAVLVHDQGQMIDDIDTHIENAVIATTQ 241
I +E + ER++ IQ++ ++E+ +I KDL+ LV DQG ++D ID +I+N
Sbjct: 230 KIKKSEEISIEREKEIQQVVESVSELAQIMKDLSALVIDQGTIVDRIDYNIQNVASTVDD 289
Query: 242 AKGQLSKAAKTQK 254
QL KA +TQ+
Sbjct: 290 GLKQLQKAERTQR 302
>AT3G03800.1 | chr3:969314-971460 FORWARD LENGTH=307
Length = 306
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 47/69 (68%)
Query: 188 AVIEERDQGIQEIQHQITEVNEIFKDLAVLVHDQGQMIDDIDTHIENAVIATTQAKGQLS 247
A I+ER +++++ ++ ++ ++F D+AVLV QG+M+D+I+ + +AV QL+
Sbjct: 206 AEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGNNQLT 265
Query: 248 KAAKTQKSN 256
KA K+QKS+
Sbjct: 266 KAVKSQKSS 274
>AT1G61290.1 | chr1:22605188-22606216 FORWARD LENGTH=304
Length = 303
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 190 IEERDQGIQEIQHQITEVNEIFKDLAVLVHDQGQMIDDIDTHIENAVIATTQAKGQLSKA 249
I+ER ++EI+ + E++++F D+A LV QGQ ++DI++H+ A + QL A
Sbjct: 206 IQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNDIESHVSKASSFVRRGTDQLQDA 265
Query: 250 AKTQKSN 256
+ QKS+
Sbjct: 266 REYQKSS 272
>AT4G02195.1 | chr4:970099-972192 REVERSE LENGTH=324
Length = 323
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 192 ERDQGIQEIQHQITEVNEIFKDLAVLVHDQGQMIDDIDTHIENAVIATTQAKGQLSKAAK 251
ER++ IQ++ + ++ +I KDL+ LV DQG ++D ID +++N + + QL KA +
Sbjct: 232 EREREIQQVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAER 291
Query: 252 TQK 254
TQ+
Sbjct: 292 TQR 294
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.125 0.322
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,865,812
Number of extensions: 135479
Number of successful extensions: 608
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 597
Number of HSP's successfully gapped: 15
Length of query: 280
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 183
Effective length of database: 8,447,217
Effective search space: 1545840711
Effective search space used: 1545840711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)