BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0700400 Os02g0700400|AB074005
         (345 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0700400  Similar to Alternative oxidase 1a (Fragment)        546   e-156
Os04g0600200  Similar to Alternative oxidase 1a (Fragment)        458   e-129
Os04g0600300  Similar to Alternative oxidase 1a (Fragment)        417   e-117
Os02g0318100  Similar to Alternative oxidase 1a, mitochondri...   322   2e-88

>Os02g0700400 Similar to Alternative oxidase 1a (Fragment)
          Length = 345

 Score =  546 bits (1408), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 275/345 (79%), Positives = 275/345 (79%)

Query: 1   MGSRAAGSVLLRHLCPRVXXXXXXXXXXXXQRPPXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGSRAAGSVLLRHLCPRV            QRPP                          
Sbjct: 1   MGSRAAGSVLLRHLCPRVSSSTSAAAHAHAQRPPLAGAGGGGVALWARLLSTSAAAAKEE 60

Query: 61  XXXXXXNTGSXXXXXXXXXXXXXXGXXXXXXXXXXXXYWGIEASKLASKDGVEWKWSCFR 120
                 NTGS              G            YWGIEASKLASKDGVEWKWSCFR
Sbjct: 61  TAASKENTGSTAAAKAEATKAAKEGPASATASPVASSYWGIEASKLASKDGVEWKWSCFR 120

Query: 121 PWETYSPDTTIDLKKHHEPKVLLDKVAYWTVKALRVPTDIFFQRRYGCRAMMLETVAAVP 180
           PWETYSPDTTIDLKKHHEPKVLLDKVAYWTVKALRVPTDIFFQRRYGCRAMMLETVAAVP
Sbjct: 121 PWETYSPDTTIDLKKHHEPKVLLDKVAYWTVKALRVPTDIFFQRRYGCRAMMLETVAAVP 180

Query: 181 GMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFMEVAKPRWYERALVLAVQGV 240
           GMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFMEVAKPRWYERALVLAVQGV
Sbjct: 181 GMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFMEVAKPRWYERALVLAVQGV 240

Query: 241 FFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEAGKIENVPAPPIAIDYWRLPA 300
           FFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEAGKIENVPAPPIAIDYWRLPA
Sbjct: 241 FFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEAGKIENVPAPPIAIDYWRLPA 300

Query: 301 GATLKDVVVVVRADEAHHRDVNHFASDVHFQGMDLKDIPAPLDYH 345
           GATLKDVVVVVRADEAHHRDVNHFASDVHFQGMDLKDIPAPLDYH
Sbjct: 301 GATLKDVVVVVRADEAHHRDVNHFASDVHFQGMDLKDIPAPLDYH 345



>Os04g0600200 Similar to Alternative oxidase 1a (Fragment)
          Length = 332

 Score =  458 bits (1179), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 214/249 (85%), Positives = 228/249 (91%), Gaps = 1/249 (0%)

Query: 98  YWGIEASK-LASKDGVEWKWSCFRPWETYSPDTTIDLKKHHEPKVLLDKVAYWTVKALRV 156
           YWGIE SK L  +DG EWKWSCFRPWETY+ DT+IDL KHH PK LLDK+AYWTVK+LR 
Sbjct: 84  YWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPKTLLDKIAYWTVKSLRF 143

Query: 157 PTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMH 216
           PTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFE SGGWIR LLEEAENERMH
Sbjct: 144 PTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRTLLEEAENERMH 203

Query: 217 LMTFMEVAKPRWYERALVLAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLK 276
           LMTFMEVA P+WYERALV+ VQGVFFNAYFLGYLLSPK AHRVVGYLEEEAIHSYTE+LK
Sbjct: 204 LMTFMEVANPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFLK 263

Query: 277 DIEAGKIENVPAPPIAIDYWRLPAGATLKDVVVVVRADEAHHRDVNHFASDVHFQGMDLK 336
           D+EAGKI+NVPAP IAIDYWRLPA ATLKDVV VVRADEAHHRDVNHFASD+H+QGM+LK
Sbjct: 264 DLEAGKIDNVPAPAIAIDYWRLPANATLKDVVTVVRADEAHHRDVNHFASDIHYQGMELK 323

Query: 337 DIPAPLDYH 345
             PAP+ YH
Sbjct: 324 QTPAPIGYH 332



>Os04g0600300 Similar to Alternative oxidase 1a (Fragment)
          Length = 335

 Score =  417 bits (1071), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 192/248 (77%), Positives = 216/248 (87%)

Query: 98  YWGIEASKLASKDGVEWKWSCFRPWETYSPDTTIDLKKHHEPKVLLDKVAYWTVKALRVP 157
           YWGI+  KL  +DG EWKW  FRPW+TY+ DT+ID+ KHHEPK L DK+AYWTV++L VP
Sbjct: 88  YWGIQPPKLVKEDGTEWKWLSFRPWDTYTSDTSIDVTKHHEPKGLPDKLAYWTVRSLAVP 147

Query: 158 TDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMHL 217
            D+FFQRR+   A++LETVA VPGMVGGMLLHLRSLRRFE SGGWIRALLEEAENERMHL
Sbjct: 148 RDLFFQRRHASHALLLETVAGVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAENERMHL 207

Query: 218 MTFMEVAKPRWYERALVLAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKD 277
           MTF+EV +PRW+ERALVLA QGVFFNAYF+GYL+SPK AHR VGYLEEEA+ SYTEYLKD
Sbjct: 208 MTFLEVMQPRWWERALVLAAQGVFFNAYFVGYLVSPKFAHRFVGYLEEEAVSSYTEYLKD 267

Query: 278 IEAGKIENVPAPPIAIDYWRLPAGATLKDVVVVVRADEAHHRDVNHFASDVHFQGMDLKD 337
           +EAGKIEN PAP IAIDYWRLPA ATLKDVV V+RADEAHHRD+NHFASD+  QGM LKD
Sbjct: 268 LEAGKIENTPAPAIAIDYWRLPADATLKDVVTVIRADEAHHRDLNHFASDIQQQGMKLKD 327

Query: 338 IPAPLDYH 345
            PAP+ YH
Sbjct: 328 TPAPIGYH 335



>Os02g0318100 Similar to Alternative oxidase 1a, mitochondrial precursor (EC
           1.-.-.-)
          Length = 192

 Score =  322 bits (826), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 149/183 (81%), Positives = 170/183 (92%)

Query: 163 QRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFME 222
           QRRYGCRAMMLETVAAVPGMV G +LHLRSLRRFEHSGGWIRALLEEAENERMHLMTFME
Sbjct: 10  QRRYGCRAMMLETVAAVPGMVAGAVLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFME 69

Query: 223 VAKPRWYERALVLAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEAGK 282
           V++PRWYERALV+AVQG FFNAY   YLLSP+ AHR+VGYLEEEA+HSYTE+L+D++AGK
Sbjct: 70  VSQPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSYTEFLRDLDAGK 129

Query: 283 IENVPAPPIAIDYWRLPAGATLKDVVVVVRADEAHHRDVNHFASDVHFQGMDLKDIPAPL 342
           I++VPAP IAIDYWRLPA ATL+DVV+VVRADEAHHRDVNH+ASD+H+QG  L+++ APL
Sbjct: 130 IDDVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHALREVAAPL 189

Query: 343 DYH 345
            YH
Sbjct: 190 GYH 192



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.138    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,926,723
Number of extensions: 383803
Number of successful extensions: 753
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 753
Number of HSP's successfully gapped: 4
Length of query: 345
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 243
Effective length of database: 11,709,973
Effective search space: 2845523439
Effective search space used: 2845523439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)