BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0689000 Os02g0689000|AK109306
         (187 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0689000  Pectinesterase inhibitor domain containing pro...   187   6e-48
Os04g0587200  Pectinesterase inhibitor domain containing pro...    69   2e-12

>Os02g0689000 Pectinesterase inhibitor domain containing protein
          Length = 187

 Score =  187 bits (474), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 99/147 (67%)

Query: 16  STCESSVLQDTCKSVAAGHKYVTYNDCIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 75
           STCESSVLQDTCKSVAAGHKYVTYNDCIK                               
Sbjct: 16  STCESSVLQDTCKSVAAGHKYVTYNDCIKAFQADSASATAADARGLAAIAARIAEKAANA 75

Query: 76  XXXXXXXXXXXXXXXXXKDRLGVCAEVYSDAVDQLGETAEDIARGGDEATQDAVTQLSAA 135
                            KDRLGVCAEVYSDAVDQLGETAEDIARGGDEATQDAVTQLSAA
Sbjct: 76  TSARIAALRAAEKDARRKDRLGVCAEVYSDAVDQLGETAEDIARGGDEATQDAVTQLSAA 135

Query: 136 LDAPGTCEDAFGEADDASPLAPEDAEF 162
           LDAPGTCEDAFGEADDASPLAPEDAEF
Sbjct: 136 LDAPGTCEDAFGEADDASPLAPEDAEF 162



>Os04g0587200 Pectinesterase inhibitor domain containing protein
          Length = 186

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 43/70 (61%)

Query: 93  KDRLGVCAEVYSDAVDQLGETAEDIARGGDEATQDAVTQLSAALDAPGTCEDAFGEADDA 152
           KD L  C EVY  AVD L E A+ IA    +  +DAVT LSAALD P TCED F E   A
Sbjct: 99  KDCLSACGEVYDSAVDSLDEAAKGIASRSADGLRDAVTVLSAALDTPDTCEDGFRELGLA 158

Query: 153 SPLAPEDAEF 162
           SPL  ED EF
Sbjct: 159 SPLVAEDEEF 168



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.127    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,447,599
Number of extensions: 99706
Number of successful extensions: 306
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 3
Length of query: 187
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 92
Effective length of database: 12,075,471
Effective search space: 1110943332
Effective search space used: 1110943332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 153 (63.5 bits)