BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0682700 Os02g0682700|Os02g0682700
         (199 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0682700  Conserved hypothetical protein                      380   e-106
Os06g0180800  Zinc finger, RING-type domain containing protein     75   3e-14

>Os02g0682700 Conserved hypothetical protein
          Length = 199

 Score =  380 bits (976), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/199 (93%), Positives = 187/199 (93%)

Query: 1   MRPKEEQADLSGSRHRQPDHATLPVASAHTTRAHRALPVAPAMLEALLVNWFLPDTCLVR 60
           MRPKEEQADLSGSRHRQPDHATLPVASAHTTRAHRALPVAPAMLEALLVNWFLPDTCLVR
Sbjct: 1   MRPKEEQADLSGSRHRQPDHATLPVASAHTTRAHRALPVAPAMLEALLVNWFLPDTCLVR 60

Query: 61  VATVGQPGAMRRITVHYVNLLPVAGAGEAHVDGAANYSGKQRSSVMELIHRWSMDINAWE 120
           VATVGQPGAMRRITVHYVNLLPVAGAGEAHVDGAANYSGKQRSSVMELIHRWSMDINAWE
Sbjct: 61  VATVGQPGAMRRITVHYVNLLPVAGAGEAHVDGAANYSGKQRSSVMELIHRWSMDINAWE 120

Query: 121 AKERLDQKLRNQMEAVIKRHHSTGSIKLNRASSGGGRSTVTAAMGVQRAVYSKKGVXXXX 180
           AKERLDQKLRNQMEAVIKRHHSTGSIKLNRASSGGGRSTVTAAMGVQRAVYSKKGV    
Sbjct: 121 AKERLDQKLRNQMEAVIKRHHSTGSIKLNRASSGGGRSTVTAAMGVQRAVYSKKGVMRRL 180

Query: 181 XXXXXXXXDAAEQAECTCA 199
                   DAAEQAECTCA
Sbjct: 181 MRWSRLRWDAAEQAECTCA 199



>Os06g0180800 Zinc finger, RING-type domain containing protein
          Length = 130

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 50/70 (71%), Gaps = 4/70 (5%)

Query: 131 NQMEAVIKRHHSTGSIKLNRASSGGG----RSTVTAAMGVQRAVYSKKGVXXXXXXXXXX 186
           +Q E+VIKRHHSTGSIKLNR ++GGG    RST TAAMGVQR VYS+KGV          
Sbjct: 1   SQRESVIKRHHSTGSIKLNRGATGGGGGGGRSTATAAMGVQREVYSRKGVMRRLMRWSRL 60

Query: 187 XXDAAEQAEC 196
             DAAEQAEC
Sbjct: 61  RWDAAEQAEC 70



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.127    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,657,854
Number of extensions: 255956
Number of successful extensions: 732
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 731
Number of HSP's successfully gapped: 2
Length of query: 199
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 103
Effective length of database: 12,023,257
Effective search space: 1238395471
Effective search space used: 1238395471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)