BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0677800 Os02g0677800|AK064865
(85 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0677800 Similar to 40S ribosomal protein S13 170 2e-43
Os08g0117200 Similar to 40S ribosomal protein S13 115 8e-27
Os08g0117300 Similar to 40S ribosomal protein S13 115 1e-26
AK108421 103 3e-23
Os07g0572900 Similar to 40S ribosomal protein S13 100 3e-22
>Os02g0677800 Similar to 40S ribosomal protein S13
Length = 85
Score = 170 bits (431), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 WVGLAPKILEDLYFLIKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLP 60
WVGLAPKILEDLYFLIKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLP
Sbjct: 1 WVGLAPKILEDLYFLIKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLP 60
Query: 61 PTLRSWIIFLEFSTVFSCSLYFYKA 85
PTLRSWIIFLEFSTVFSCSLYFYKA
Sbjct: 61 PTLRSWIIFLEFSTVFSCSLYFYKA 85
>Os08g0117200 Similar to 40S ribosomal protein S13
Length = 151
Score = 115 bits (287), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 56/60 (93%), Positives = 57/60 (95%)
Query: 3 GLAPKILEDLYFLIKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLPPT 62
GLAP+I EDLYFLIKKAVAIRKHLERNRKDKDS FRLILVESRIHRL RYYKRTKKLPPT
Sbjct: 79 GLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPT 138
>Os08g0117300 Similar to 40S ribosomal protein S13
Length = 151
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/60 (93%), Positives = 57/60 (95%)
Query: 3 GLAPKILEDLYFLIKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLPPT 62
GLAP+I EDLYFLIKKAVAIRKHLERNRKDKDS FRLILVESRIHRL RYYKRTKKLPPT
Sbjct: 79 GLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPT 138
>AK108421
Length = 151
Score = 103 bits (256), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 54/62 (87%)
Query: 3 GLAPKILEDLYFLIKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLPPT 62
GLAP++ EDLYFLIKKAVA+RKHLERNRKDKDS FRLIL+ESRIHRL RYYK LPPT
Sbjct: 79 GLAPELPEDLYFLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLSRYYKTVGVLPPT 138
Query: 63 LR 64
R
Sbjct: 139 WR 140
>Os07g0572900 Similar to 40S ribosomal protein S13
Length = 151
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/58 (79%), Positives = 53/58 (91%)
Query: 3 GLAPKILEDLYFLIKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLP 60
GLAP++ EDLYFLIKKAVA+RKHLERNRKDKD+ FRLILVESR+HRL RYY+ KK+P
Sbjct: 79 GLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVESRVHRLTRYYRLAKKIP 136
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.143 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,752,599
Number of extensions: 83183
Number of successful extensions: 198
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 5
Length of query: 85
Length of database: 17,035,801
Length adjustment: 55
Effective length of query: 30
Effective length of database: 14,164,031
Effective search space: 424920930
Effective search space used: 424920930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 149 (62.0 bits)