Os08g0117200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S13.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0117200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 40S ribosomal protein S13.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.4 | 0.306 | 12.8 | 0.786 | 0.778 | 0.357 | 0.682 | -0.916 | 0.0229 | 18.2 | 20.1 | 2851 | -- | -- |
| 43.56 | 0.307 | 12.8 | 0.953 | 0.772 | 0.49 | 0.748 | -- | 0.0637 | 18.1 | 19.9 | 2697 | -- | -- |
| 43.51 | 0.307 | 12.8 | 0.785 | 0.781 | 0.366 | -- | -0.912 | 0.0258 | 18.1 | 20.1 | 2787 | -- | -- |
| 44.81 | 0.312 | 12.8 | 0.924 | 0.787 | 0.541 | -- | -- | 0.0606 | 18.1 | 19.8 | 2748 | -- | -- |
| 55.81 | 0.348 | 12.8 | 0.915 | -- | 0.637 | -- | -0.292 | -0.0711 | -- | 26.2 | 343 | -- | -- |
| 48.88 | 0.328 | 12.8 | 1.22 | 0.762 | -- | 0.806 | -- | 0.189 | 18.2 | -- | -- | -- | -- |
| 50.48 | 0.333 | 12.8 | 1.21 | 0.766 | -- | -- | -- | 0.192 | 18.2 | -- | -- | -- | -- |
| 55.54 | 0.347 | 12.8 | 1.03 | -- | 0.616 | -- | -- | 0.0082 | -- | 26.36 | 341 | -- | -- |
| 49.38 | 0.327 | 12.9 | -- | 0.766 | 1.05 | -- | -- | -0.167 | 18.1 | 17.47 | 47520 | -- | -- |
| 80.92 | 0.42 | 12.8 | 1.19 | -- | -- | -- | -- | 0.175 | -- | -- | -- | -- | -- |
| 89.13 | 0.442 | 12.8 | -- | 0.749 | -- | -- | -- | 0.0568 | 18.3 | -- | -- | -- | -- |
| 79.74 | 0.416 | 12.8 | -- | -- | 1.05 | -- | -- | -0.159 | -- | 16.6 | 47520 | -- | -- |
| 118.25 | 0.508 | 12.8 | -- | -- | -- | -- | -- | 0.0428 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.39 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 3 | 39.82 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 13 | 40.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 17 | 40.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 19 | 40.48 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 20 | 40.48 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 47 | 40.96 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 63 | 41.15 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 65 | 41.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 70 | 41.21 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 78 | 41.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 82 | 41.30 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 95 | 41.40 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 16 |
| 105 | 41.46 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 110 | 41.50 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 111 | 41.50 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 114 | 41.52 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 134 | 41.62 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 170 | 41.78 | temperature | 25 | 90 | > th | dose dependent | sin | 5 | NA |
| 201 | 41.89 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 222 | 41.95 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 235 | 41.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 246 | 42.02 | wind | 5 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 281 | 42.13 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 287 | 42.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 307 | 42.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 319 | 42.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 323 | 42.24 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 341 | 42.27 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 383 | 42.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 6 |
| 391 | 42.32 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 411 | 42.35 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 412 | 42.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 435 | 42.37 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 437 | 42.38 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 451 | 42.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 639 | 42.55 | wind | 1 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 674 | 42.58 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 783 | 42.68 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 810 | 42.70 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 22 |
| 811 | 42.71 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 3 | 5 |
| 819 | 42.72 | wind | 5 | 270 | < th | dose independent | rect. | 3 | 2 |
| 820 | 42.72 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 833 | 42.73 | wind | 1 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 857 | 42.75 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 14 |
| 872 | 42.77 | wind | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 904 | 42.80 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 3 |
| 925 | 42.81 | wind | 5 | 90 | < th | dose independent | rect. | 3 | 5 |
| 956 | 42.82 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 962 | 42.83 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 965 | 42.83 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 3 | 6 |
| 987 | 42.85 | wind | 1 | 14400 | < th | dose independent | sin | 12 | NA |