Os02g0677800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S13.
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Os02g0677800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein S13.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.13 | 0.542 | 7.48 | -1.38 | 0.277 | -0.726 | 1.17 | -2.83 | 0.309 | 1.7 | 83.92 | 6200 | -- | -- |
| 141.74 | 0.554 | 7.48 | -1.18 | 0.306 | -0.78 | 1.3 | -- | 0.292 | 2.38 | 80.99 | 4074 | -- | -- |
| 138.11 | 0.547 | 7.47 | -1.43 | 0.297 | -0.681 | -- | -3.18 | 0.315 | 2.83 | 85 | 6098 | -- | -- |
| 147.36 | 0.565 | 7.5 | -1.23 | 0.361 | -0.85 | -- | -- | 0.274 | 2.53 | 81.08 | 4036 | -- | -- |
| 143 | 0.557 | 7.48 | -1.42 | -- | -0.728 | -- | -2.93 | 0.31 | -- | 85 | 6131 | -- | -- |
| 153.45 | 0.581 | 7.51 | -1.22 | 0.293 | -- | 1.19 | -- | 0.237 | 2.26 | -- | -- | -- | -- |
| 158.43 | 0.589 | 7.51 | -1.25 | 0.308 | -- | -- | -- | 0.229 | 3.05 | -- | -- | -- | -- |
| 152.98 | 0.576 | 7.5 | -1.21 | -- | -0.764 | -- | -- | 0.261 | -- | 84.01 | 3326 | -- | -- |
| 186.71 | 0.636 | 7.48 | -- | 0.343 | -0.903 | -- | -- | 0.363 | 2.33 | 78 | 3996 | -- | -- |
| 163.84 | 0.598 | 7.51 | -1.24 | -- | -- | -- | -- | 0.237 | -- | -- | -- | -- | -- |
| 199.92 | 0.661 | 7.48 | -- | 0.283 | -- | -- | -- | 0.369 | 3.04 | -- | -- | -- | -- |
| 190.81 | 0.643 | 7.48 | -- | -- | -0.838 | -- | -- | 0.361 | -- | 81 | 3302 | -- | -- |
| 204.5 | 0.667 | 7.48 | -- | -- | -- | -- | -- | 0.375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.15 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 14 | 127.80 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 4 |
| 16 | 127.99 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 17 | 127.99 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 3 |
| 23 | 128.18 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 24 | 128.33 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 25 | 128.37 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 32 | 128.59 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 38 | 128.75 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 70 | 129.49 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 9 |
| 136 | 130.46 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 143 | 130.49 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 9 |
| 144 | 130.49 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 146 | 130.49 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 148 | 130.51 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 153 | 130.55 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 164 | 130.63 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 2 | 15 |
| 165 | 130.63 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 9 |
| 166 | 130.63 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 2 | 15 |
| 169 | 130.65 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 2 | 15 |
| 183 | 130.76 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 193 | 130.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 13 |
| 199 | 130.91 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 19 | 17 |
| 223 | 131.07 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 238 | 131.11 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 22 | 15 |
| 242 | 131.12 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 3 |
| 254 | 131.14 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 306 | 131.38 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 5 |
| 338 | 131.57 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 342 | 131.59 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 2 | NA |
| 343 | 131.59 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 2 | NA |
| 345 | 131.60 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 2 | NA |
| 360 | 131.65 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 362 | 131.67 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 19 | 17 |
| 364 | 131.67 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 6 | 6 |
| 372 | 131.73 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 383 | 131.76 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 395 | 131.80 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 8 | 4 |
| 410 | 131.87 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 412 | 131.87 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 451 | 132.03 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 452 | 132.05 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 457 | 132.07 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 2 | 2 |
| 469 | 132.12 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 479 | 132.14 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 498 | 132.22 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 556 | 132.39 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 602 | 132.51 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 635 | 132.61 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 636 | 132.61 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 642 | 132.62 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 650 | 132.66 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 3 | NA |
| 687 | 132.75 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 13 |
| 705 | 132.80 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 17 |
| 708 | 132.80 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 17 |
| 711 | 132.81 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 17 |
| 740 | 132.88 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 780 | 133.02 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 817 | 133.13 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 839 | 133.17 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 20 |
| 842 | 133.18 | humidity | 70.0 | 1440 | > th | dose independent | sin | 7 | NA |
| 893 | 133.30 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 947 | 133.41 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 19 |
| 971 | 133.48 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 995 | 133.54 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 2 |