BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0643800 Os02g0643800|J100067A09
         (190 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0643800  Auxin responsive SAUR protein family protein        197   6e-51
Os04g0537100  Similar to Auxin-induced protein X15                112   1e-25

>Os02g0643800 Auxin responsive SAUR protein family protein
          Length = 190

 Score =  197 bits (500), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 109/170 (64%), Positives = 109/170 (64%)

Query: 21  WALCHXXXXXXXXXXXXQPCPGAAGGRSPLLAAGSVKKXXXXXXXXIVVHQRGGEKAVLK 80
           WALCH            QPCPGAAGGRSPLLAAGSVKK        IVVHQRGGEKAVLK
Sbjct: 21  WALCHRRRRRGRGYLRLQPCPGAAGGRSPLLAAGSVKKQPPPPQQQIVVHQRGGEKAVLK 80

Query: 81  WGXXXXXXXXXXXXXXXXXXXXXXPGEATTPKGQVAVYVGGGEPGESMRYVVPVVYFNHP 140
           WG                      PGEATTPKGQVAVYVGGGEPGESMRYVVPVVYFNHP
Sbjct: 81  WGRSLARRMRLLRRRGSERLLEESPGEATTPKGQVAVYVGGGEPGESMRYVVPVVYFNHP 140

Query: 141 LFGELLREAEEEFGFAHPGGITIPCXXXXXXXXXXXXXXXXXXXKVPTWW 190
           LFGELLREAEEEFGFAHPGGITIPC                   KVPTWW
Sbjct: 141 LFGELLREAEEEFGFAHPGGITIPCAAARFERAAAVAAAGGGGRKVPTWW 190



>Os04g0537100 Similar to Auxin-induced protein X15
          Length = 167

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/57 (91%), Positives = 55/57 (96%)

Query: 109 TTPKGQVAVYVGGGEPGESMRYVVPVVYFNHPLFGELLREAEEEFGFAHPGGITIPC 165
           +TPKGQVAVYVGGG PGES+RYVVPVVYFNHP+FGELLREAEEEFGF HPGGITIPC
Sbjct: 89  STPKGQVAVYVGGGNPGESLRYVVPVVYFNHPMFGELLREAEEEFGFQHPGGITIPC 145



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.140    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,613,055
Number of extensions: 161573
Number of successful extensions: 291
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 3
Length of query: 190
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 95
Effective length of database: 12,075,471
Effective search space: 1147169745
Effective search space used: 1147169745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)