BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0640700 Os02g0640700|AK106833
(522 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0640700 UBX domain containing protein 732 0.0
Os07g0294500 134 2e-31
Os04g0670800 UAS domain containing protein 118 1e-26
>Os02g0640700 UBX domain containing protein
Length = 522
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/522 (71%), Positives = 375/522 (71%)
Query: 1 MDNAAAVATFMEITSCGSQEAAVQHLASCRWDLDAALNRYFIFGGXXXXXXXXXXXXXXX 60
MDNAAAVATFMEITSCGSQEAAVQHLASCRWDLDAALNRYFIFGG
Sbjct: 1 MDNAAAVATFMEITSCGSQEAAVQHLASCRWDLDAALNRYFIFGGVLAAAPAPAPVADVA 60
Query: 61 XXXXXXXGVRAPIPARSDTLYGDMYXXXXXXXXXXXXXXXVWEDEPPAVTPSVAPVYIQM 120
GVRAPIPARSDTLYGDMY VWEDEPPAVTPSVAPVYIQM
Sbjct: 61 PPAALDDGVRAPIPARSDTLYGDMYGGARRRDRDSRPAPSVWEDEPPAVTPSVAPVYIQM 120
Query: 121 PSANPAVAPVQIQMPSETXXXXXXXXXXXXXXXXXXXXXIAVXXXXXXXXXXXXXXXXXX 180
PSANPAVAPVQIQMPSET IAV
Sbjct: 121 PSANPAVAPVQIQMPSETAASVPAAPVPVHAPSQPPVVAIAVKKEQNEKDEEEDNGRDDD 180
Query: 181 XXXXXXXXXXXXXXXXXXXXXECIEXXXXXXXXXXXXXXXXLAEMYRRPRELMHDADFHS 240
ECIE LAEMYRRPRELMHDADFHS
Sbjct: 181 DDGYSDSDYGMDTDDDDDRYDECIEKTPSPPPKSTQQQATTLAEMYRRPRELMHDADFHS 240
Query: 241 TKVHAARQDRWLLLNLQSAGEFASQMHNRDLWADQVIARVVRESFVFSLLENSYGDDDDE 300
TKVHAARQDRWLLLNLQSAGEFASQMHNRDLWADQVIARVVRESFVFSLLENSYGDDDDE
Sbjct: 241 TKVHAARQDRWLLLNLQSAGEFASQMHNRDLWADQVIARVVRESFVFSLLENSYGDDDDE 300
Query: 301 ASKVCCFYKLHDQLPAVLVIDPITGQMLAKWSGVIQPETFLVDIEEYSKSKPSMRSKPYI 360
ASKVCCFYKLHDQLPAVLVIDPITGQMLAKWSGVIQPETFLVDIEEYSKSKPSMRSKPYI
Sbjct: 301 ASKVCCFYKLHDQLPAVLVIDPITGQMLAKWSGVIQPETFLVDIEEYSKSKPSMRSKPYI 360
Query: 361 FQRKPMPVRSAPAASEQHHQEPAMVDTAAPMDIHNVQEPDTXXXXXXXVVEHGVXXXXXX 420
FQRKPMPVRSAPAASEQHHQEPAMVDTAAPMDIHNVQEPDT VVEHGV
Sbjct: 361 FQRKPMPVRSAPAASEQHHQEPAMVDTAAPMDIHNVQEPDTAAPAPAPVVEHGVQQPATA 420
Query: 421 XXXXXXXXXXXXXXXXXXXXXKMYRMRVRFPDGSVVTKEFGCKRRVAVLFNYCRSVLHDK 480
KMYRMRVRFPDGSVVTKEFGCKRRVAVLFNYCRSVLHDK
Sbjct: 421 GAGAQQPADEQDDDDQPMEGEKMYRMRVRFPDGSVVTKEFGCKRRVAVLFNYCRSVLHDK 480
Query: 481 PQAFKIKRLLGVGGAFHELPQGDHSFEDLGLNCATVSVILDT 522
PQAFKIKRLLGVGGAFHELPQGDHSFEDLGLNCATVSVILDT
Sbjct: 481 PQAFKIKRLLGVGGAFHELPQGDHSFEDLGLNCATVSVILDT 522
>Os07g0294500
Length = 317
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 89/134 (66%), Gaps = 6/134 (4%)
Query: 222 LAEMYRRPRELMHDADFHSTKVHAARQDRWLLLNLQS---AGEFASQMHNRDLWADQVIA 278
LAE+YR PREL + FHS KVHAAR RWLL+N+Q+ EFAS + NRD+WAD+ +A
Sbjct: 151 LAELYRAPRELTYRGGFHSAKVHAARLSRWLLVNVQAEYGGREFASHLLNRDVWADETVA 210
Query: 279 RVVRESFVFSLLENSYGDDDDEASKVCCFYKL-HDQLPAVLVIDPITGQMLAKWSGVIQP 337
VR++FVF + GD E SKVCC YKL +LPAVL +DP+TGQ++ K + P
Sbjct: 211 MYVRDNFVF--WQADEGDSGGEGSKVCCHYKLDRAKLPAVLFVDPVTGQLMEKLHHITDP 268
Query: 338 ETFLVDIEEYSKSK 351
FL+ E++ SK
Sbjct: 269 TDFLMAAEKFIDSK 282
>Os04g0670800 UAS domain containing protein
Length = 331
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 148/316 (46%), Gaps = 36/316 (11%)
Query: 222 LAEMYRRPRELMHDADFHSTKVHAARQDRWLLLNLQSAGEFASQMHNRDLWADQVIARVV 281
LA +YR P LM + F K+ A+ D+WLL+NLQS EF+S M NRD WA++ +A+ +
Sbjct: 36 LAALYRPPFALMFNGPFDKAKLEASVLDKWLLINLQSTEEFSSHMLNRDTWANEAVAQTI 95
Query: 282 RESFVFSLLENSYGDDDDEASKVCCFYKLHDQLPAVLVIDPITGQMLAKWSGVIQPETFL 341
R +F+F + + D E KVC +Y L +PA+L+IDPITGQ + W+G+I P+ L
Sbjct: 96 RSNFIFWQVYH----DTSEGRKVCTYYNLV-SVPAILLIDPITGQKMRGWNGMIHPDRLL 150
Query: 342 VDI--------EEYSKSKPSMRSKPYIFQ-------RKPMPVRSAPAASEQHHQEPAMVD 386
D+ +E+ ++P R + + + P+PV A+E +E A
Sbjct: 151 EDLMPYLDKGPKEHHAAQPQKRPRKVDQETSIGKQGKTPVPV----VATEDEDEELARAV 206
Query: 387 TAAPMDIHNVQEPDTXXXXXXXVVEHGVXXXXXXXXXXXXXXXXXXXXXXXXXXXKMYRM 446
A+ + + DT VE+ + R+
Sbjct: 207 AAS---LEESKGSDTSEEKIEPEVENEPSLSAKLNYPPLPEEPKGSREL-------LCRV 256
Query: 447 RVRFPDGSVVTKEFGCKRRVAVLFNYCRSVLHD-KPQAFKIKRLLGVGGAFHELPQGDHS 505
+R PDG + + F + +L+++C + D +AF + + E + D +
Sbjct: 257 AIRLPDGRRIQRNFLHTDPIKLLWSFCYPQVEDGDKKAFHFVQPIPRASTNLEY-ESDKT 315
Query: 506 FEDLGLNCATVSVILD 521
F++ GL + ++++ D
Sbjct: 316 FKEAGLANSMINLLWD 331
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,408,602
Number of extensions: 483978
Number of successful extensions: 1397
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1393
Number of HSP's successfully gapped: 4
Length of query: 522
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 417
Effective length of database: 11,553,331
Effective search space: 4817739027
Effective search space used: 4817739027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)