BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0639700 Os02g0639700|AK068974
         (488 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0639700  UBA-like domain containing protein                 1013   0.0  
Os01g0225100  Smr protein/MutS2 C-terminal domain containing...   106   3e-23

>Os02g0639700 UBA-like domain containing protein
          Length = 488

 Score = 1013 bits (2618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/488 (100%), Positives = 488/488 (100%)

Query: 1   MDLRHSQTPSSDDETRALNALLDAFSSAFSLDDIATAYCRANGDVNRAGDLLTELEHPMA 60
           MDLRHSQTPSSDDETRALNALLDAFSSAFSLDDIATAYCRANGDVNRAGDLLTELEHPMA
Sbjct: 1   MDLRHSQTPSSDDETRALNALLDAFSSAFSLDDIATAYCRANGDVNRAGDLLTELEHPMA 60

Query: 61  KSNEVDSSVGTIHPPSGKAIEENSTESSGQAKSREKMQKSSASFGTVSSMLGKGSTRATV 120
           KSNEVDSSVGTIHPPSGKAIEENSTESSGQAKSREKMQKSSASFGTVSSMLGKGSTRATV
Sbjct: 61  KSNEVDSSVGTIHPPSGKAIEENSTESSGQAKSREKMQKSSASFGTVSSMLGKGSTRATV 120

Query: 121 PLMNRASGKEKPPMVELPEYMRDDFNGKVDKSDSAPKRETLNNRDIEEFLFSMLGEGFKL 180
           PLMNRASGKEKPPMVELPEYMRDDFNGKVDKSDSAPKRETLNNRDIEEFLFSMLGEGFKL
Sbjct: 121 PLMNRASGKEKPPMVELPEYMRDDFNGKVDKSDSAPKRETLNNRDIEEFLFSMLGEGFKL 180

Query: 181 SMDMIREVLGSCGYDIKKSMEELMSVSTKDTSKKAEDKHYIAQDAAVECSSTKGSCLESQ 240
           SMDMIREVLGSCGYDIKKSMEELMSVSTKDTSKKAEDKHYIAQDAAVECSSTKGSCLESQ
Sbjct: 181 SMDMIREVLGSCGYDIKKSMEELMSVSTKDTSKKAEDKHYIAQDAAVECSSTKGSCLESQ 240

Query: 241 STFRNGSAYSLRGKRHSSSQISPGELLVSIFTVPERSEEEPIGKRYELGANRNRVPDQKP 300
           STFRNGSAYSLRGKRHSSSQISPGELLVSIFTVPERSEEEPIGKRYELGANRNRVPDQKP
Sbjct: 241 STFRNGSAYSLRGKRHSSSQISPGELLVSIFTVPERSEEEPIGKRYELGANRNRVPDQKP 300

Query: 301 VVEPLEDISSETNCYPVKVILSKELVAHNEEDYQNYRRAAKQHWDMMKQYYEKAVDAFRE 360
           VVEPLEDISSETNCYPVKVILSKELVAHNEEDYQNYRRAAKQHWDMMKQYYEKAVDAFRE
Sbjct: 301 VVEPLEDISSETNCYPVKVILSKELVAHNEEDYQNYRRAAKQHWDMMKQYYEKAVDAFRE 360

Query: 361 GNQKEVEYLLGEGKHYYMMARLADEKSSAEIVKSKKVESKNELCLDLRGQDPANVANLVR 420
           GNQKEVEYLLGEGKHYYMMARLADEKSSAEIVKSKKVESKNELCLDLRGQDPANVANLVR
Sbjct: 361 GNQKEVEYLLGEGKHYYMMARLADEKSSAEIVKSKKVESKNELCLDLRGQDPANVANLVR 420

Query: 421 LHLRQLSNIPSFEYLKVITGAEDGSFKSAQRRRKVMKYLEKKSIVWTEEESNPGTILIPI 480
           LHLRQLSNIPSFEYLKVITGAEDGSFKSAQRRRKVMKYLEKKSIVWTEEESNPGTILIPI
Sbjct: 421 LHLRQLSNIPSFEYLKVITGAEDGSFKSAQRRRKVMKYLEKKSIVWTEEESNPGTILIPI 480

Query: 481 NQKQDQQD 488
           NQKQDQQD
Sbjct: 481 NQKQDQQD 488



>Os01g0225100 Smr protein/MutS2 C-terminal domain containing protein
          Length = 309

 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 111/218 (50%), Gaps = 22/218 (10%)

Query: 263 PGELLVSIFTVPERSEEEPIGKRYELGANRNRVPDQKPVVEPLEDISSETNCYPVKVILS 322
           P ++L S+F +PE+   EP               D K VV+ L+  +S        +  +
Sbjct: 98  PQQVLDSLFKIPEQRTYEPSSM------------DWKKVVKRLQSFNS-------PITSN 138

Query: 323 KELVAHNEEDYQNYRRAAKQHWDMMKQYYEKAVDAFREGNQKEVEYLLGEGKHYYMMARL 382
            +    N   YQ +R  A +H+D MK YY+KA  A+ +G +    YL  EGKHY  +AR+
Sbjct: 139 NQEKPKNGNGYQEFRTVAGRHYDTMKTYYQKAAMAYSKGEKSYASYLAEEGKHYRELARM 198

Query: 383 ADEKSSAEIVKSKKVESKNELCLDLRGQDPANVANLVRLHLRQLSNIPSFEYLKVITGAE 442
            DE++S EI +++     N + +DL GQ       L+++H+     +P+  +L+VITG  
Sbjct: 199 EDERASREIFEARNKHITNTVTIDLHGQHVKQAMRLLKVHMMICVCMPT-TFLRVITGCG 257

Query: 443 DGSFKSAQRRRKVMKYLEKKSIVWTEEESNPGTILIPI 480
                  + +R V + +EK+ + W EE  N GTI++ +
Sbjct: 258 VEGTGKGKIKRAVAELVEKEGVEWHEE--NAGTIVLRL 293



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.127    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,778,453
Number of extensions: 641399
Number of successful extensions: 1784
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1782
Number of HSP's successfully gapped: 2
Length of query: 488
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 383
Effective length of database: 11,553,331
Effective search space: 4424925773
Effective search space used: 4424925773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)