Os02g0639700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UBA-like domain containing protein.
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Os02g0639700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UBA-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.07 | 0.211 | 8.61 | 0.724 | 0.101 | -0.864 | 0.0579 | -0.681 | 0.0997 | 1.86 | 18.5 | 4844 | -- | -- |
| 20.07 | 0.209 | 8.63 | 0.731 | 0.0958 | -0.723 | 0.0576 | -- | 0.103 | 1.6 | 18.3 | 3298 | -- | -- |
| 20.08 | 0.209 | 8.61 | 0.725 | 0.102 | -0.865 | -- | -0.68 | 0.1 | 1.67 | 18.51 | 4800 | -- | -- |
| 20.08 | 0.209 | 8.64 | 0.732 | 0.0998 | -0.73 | -- | -- | 0.103 | 1.56 | 18.35 | 3290 | -- | -- |
| 20.68 | 0.212 | 8.61 | 0.717 | -- | -0.876 | -- | -0.709 | 0.0976 | -- | 18.54 | 5005 | -- | -- |
| 26.31 | 0.24 | 8.61 | 1.07 | 0.11 | -- | 0.072 | -- | 0.233 | 1.82 | -- | -- | -- | -- |
| 26.33 | 0.24 | 8.61 | 1.07 | 0.11 | -- | -- | -- | 0.233 | 1.68 | -- | -- | -- | -- |
| 20.68 | 0.212 | 8.63 | 0.731 | -- | -0.737 | -- | -- | 0.104 | -- | 18.3 | 3410 | -- | -- |
| 21.19 | 0.214 | 8.68 | -- | 0.0987 | -0.981 | -- | -- | -0.104 | 1.86 | 18 | 47520 | -- | -- |
| 27.06 | 0.243 | 8.6 | 1.07 | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
| 56.31 | 0.351 | 8.63 | -- | 0.129 | -- | -- | -- | 0.114 | 1.93 | -- | -- | -- | -- |
| 21.74 | 0.217 | 8.68 | -- | -- | -0.981 | -- | -- | -0.103 | -- | 18 | 47520 | -- | -- |
| 57.32 | 0.353 | 8.63 | -- | -- | -- | -- | -- | 0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.55 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 3 | 17.58 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 7 | 17.60 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 17 | 17.62 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 18 | 17.62 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 21 | 17.63 | radiation | 20 | 43200 | < th | dose independent | sin | 12 | NA |
| 34 | 17.63 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 18 |
| 36 | 17.65 | radiation | 10 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 37 | 17.65 | radiation | 1 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 64 | 17.70 | radiation | 20 | 43200 | < th | dose independent | rect. | 11 | 22 |
| 65 | 17.70 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 22 |
| 85 | 17.71 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 22 |
| 87 | 17.72 | radiation | 20 | 43200 | < th | dose independent | sin | 2 | NA |
| 92 | 17.72 | radiation | 20 | 43200 | < th | dose independent | no | NA | NA |
| 93 | 17.72 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 11 |
| 190 | 17.72 | radiation | 30 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 195 | 17.73 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 224 | 17.74 | radiation | 40 | 43200 | < th | dose independent | sin | 13 | NA |
| 295 | 17.75 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 385 | 17.77 | radiation | 40 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 403 | 17.78 | radiation | 40 | 43200 | > th | dose dependent | sin | 22 | NA |
| 408 | 17.78 | radiation | 40 | 43200 | > th | dose dependent | no | NA | NA |
| 622 | 17.79 | radiation | 40 | 43200 | > th | dose dependent | sin | 20 | NA |
| 697 | 17.80 | radiation | 40 | 43200 | > th | dose dependent | sin | 12 | NA |
| 858 | 17.83 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |