BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0639700 Os02g0639700|AK068974
         (488 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15390.1  | chr3:5196689-5199531 REVERSE LENGTH=491            198   6e-51
AT5G58720.1  | chr5:23719976-23722974 REVERSE LENGTH=520          122   3e-28

>AT3G15390.1 | chr3:5196689-5199531 REVERSE LENGTH=491
          Length = 490

 Score =  198 bits (503), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 157/495 (31%), Positives = 259/495 (52%), Gaps = 52/495 (10%)

Query: 10  SSDDETRALNALLDAFSSAFSLDDIATAYCRANGDVNRAGDLLTELEHPMAKSNEVDSSV 69
           +SD ++R+L  LLD F S FSLDDIA AYC+A+ +V+ AG++L+ +     + ++V+   
Sbjct: 9   NSDPDSRSLQVLLDTFGSRFSLDDIAAAYCQASQNVDVAGEILSAMAEKTPQCDQVEMKT 68

Query: 70  GTIHPPSGKAIEENSTESSGQAKSREKMQKSSASFGTVSSMLGKGSTRATVPLMNRASGK 129
            T  P      +E   +   +AK   + +++S S GTVSS++GK   R T P+ N     
Sbjct: 69  ATSKPTQVYVPKEVPRQEDSKAKVW-RPKRNSISNGTVSSVIGKEYAR-TRPISNAPKEA 126

Query: 130 EKP--------PMVEL-PEYMRDDFNGKVDKSDSAPKRETLNNRDIEEFLFSMLGEGFKL 180
            KP        P  E+  E MR    GK+ ++ +          D+EEF+  MLGEGF+ 
Sbjct: 127 TKPLKINSRDIPETEIWSEEMRKSNEGKISRAPT----------DVEEFIVKMLGEGFQA 176

Query: 181 SMDMIREVLGSCGYDIKKSMEELMSVSTKDTSKKAEDKHYIAQDAAVECSSTKGSC--LE 238
           S ++I +VLG CGYD+KKS E+L+  S  DT K A+        + V+      SC  +E
Sbjct: 177 SQEVIHQVLGVCGYDVKKSTEKLLDFS--DTKKYADVGISNEVMSKVDPQRQSTSCNQME 234

Query: 239 SQSTFRNGSAYSLRGK---RHSSSQISPGELLVSIFTVPERSEEEPIGKRYELGANRNRV 295
            Q   ++  A +  G    R++ + +   E+L ++F+  ER  ++P   R+  G  R  V
Sbjct: 235 LQKISQSVGARTFTGSQEGRNAKNGLEK-EVLEALFSGAERYVDKPKVTRH-FGERRPGV 292

Query: 296 PDQKPVVEPLEDISSETNCYPVKVILSKELVAHNEED-----YQNYRRAAKQHWDMMKQY 350
              +PV +PLED   E      +V+  K+    ++ED     ++ +R+A ++H + MK+Y
Sbjct: 293 AG-RPVFKPLEDPFQE------RVVAVKQSSNTSKEDDDENEFKAHRKAVREHLNQMKEY 345

Query: 351 YEKAVDAFREGNQKEVEYLLGEGKHYYMMARLADEKSSAEIVKSKK-----VESKNELCL 405
           Y  A +AF +G  +    L+ +G  +   AR AD+KS A+++   +      E    + +
Sbjct: 346 YGAAAEAFSKGETERAHRLVEKGHFFGQKAREADDKSVAKMIDVNQEDDSTYEEDEVVTV 405

Query: 406 DLRGQDPANVANLVRLHLRQLSNIPSFEYLKVITGAEDGSFKSAQRRRKVMKYLEKKSIV 465
           ++   +      L++  L   S I SF+YL+V  G +   FKS  +R+ ++K LE +SI 
Sbjct: 406 NMNEHEAKEALRLLKRQLIYFSGISSFKYLRVQLGEKKEDFKS--KRKHIVKLLEGESIP 463

Query: 466 WTEEESNPGTILIPI 480
           WTEE+   G ++I I
Sbjct: 464 WTEED---GGLVIMI 475



>AT5G58720.1 | chr5:23719976-23722974 REVERSE LENGTH=520
          Length = 519

 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 135/501 (26%), Positives = 227/501 (45%), Gaps = 89/501 (17%)

Query: 18  LNALLDAFSSAFSLDDIATAYCRANGDVNRAGDLLTELEHPMAKSNEVDSSVGTIHPPSG 77
           + +L++AF S  S+++   AY  A GD+N+A ++L++L     +S +  S+       SG
Sbjct: 54  IESLMEAFCSV-SMEEAMAAYKEAGGDLNKAAEILSDL----VESGDDPSTSSVASGSSG 108

Query: 78  KAIEENSTESSGQAKS------REKMQKSS------ASFGTVSSMLGK-----GSTRATV 120
           +     S   +G + S      R++  K S      A+ G VSS++ K        R   
Sbjct: 109 QETASTSEYGAGSSSSCSEDLTRDRWFKGSKQSRVIAATGMVSSVIAKDYLKPNPVRKEF 168

Query: 121 PLMNRASGKEKPPMVELPEYMRDDFNGKVDKSDSAPKRETLNNRDIEEFLFSMLGEGFKL 180
           P+M R+         EL        NGK      A  RE       E+FL SMLG+  +L
Sbjct: 169 PMMERSK--------ELCG------NGK-----KAADREK-----AEQFLSSMLGDDCEL 204

Query: 181 SMDMIREVLGSCGYDIKKSMEELMSVSTKDTSKKAEDKHYI--AQDAAVECSSTKGSCLE 238
           SM ++R+VL  CGYD+  ++  L+ +S+  T      K +     D+  E S    +   
Sbjct: 205 SMAVVRDVLCQCGYDVDMALNVLLDMSSSSTDDSLSGKCFGIGVSDSLAESSFDTDT--- 261

Query: 239 SQSTFRNGSAYSLR--GKRHSSSQIS------------PGELLVSIFTVPERSEEEPIGK 284
           S      G  YS R   K   SSQ              P ++L S+F + +  + E    
Sbjct: 262 SDCELFWGGDYSQRDYAKALMSSQDPFATTQGIDELGLPQKVLESLFNIRQNPKHE---- 317

Query: 285 RYELGANRNRVPDQKPVVEPLE----DISSETNCYPVKVILSKELVAHNEEDYQNYRRAA 340
                   ++    + V + ++    D SS +   P      K+      + Y   R+ A
Sbjct: 318 --------SKTTSWRNVAKKMQSLGIDASSSSGEEPHPNTFVKD------DSYHELRKGA 363

Query: 341 KQHWDMMKQYYEKAVDAFREGNQKEVEYLLGEGKHYYMMARLADEKSSAEIVKSKKVESK 400
              W++ K YY+KA +A+ +G +    YL  +G+     A+ ADE++S +I  ++    +
Sbjct: 364 NDQWNVTKSYYQKAAEAYSKGGRAHAAYLSDKGRVASKQAQRADERASQDIFVARNKGIE 423

Query: 401 NELCLDLRGQDPANVANLVRLHLRQLSNIPSFEYLKVITGAEDGSFKSAQRRRKVMKYLE 460
           N + +DL GQ       L++LHL   S +PS + L+VITG     F  ++ ++ V+K LE
Sbjct: 424 NVVTIDLHGQHVKPAMKLLKLHLLFGSYVPSIQTLRVITGCGASGFGKSKVKQSVVKLLE 483

Query: 461 KKSIVWTEEESNPGTILIPIN 481
           ++ + + EE  N GT+LI ++
Sbjct: 484 REGVRYCEE--NRGTLLIKLD 502



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.127    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,534,643
Number of extensions: 447937
Number of successful extensions: 1312
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1306
Number of HSP's successfully gapped: 3
Length of query: 488
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 386
Effective length of database: 8,310,137
Effective search space: 3207712882
Effective search space used: 3207712882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 114 (48.5 bits)