Os01g0225100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Smr protein/MutS2 C-terminal domain containing protein.
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Os01g0225100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Smr protein/MutS2 C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.78 | 0.181 | 12.5 | -0.52 | 0.741 | -0.522 | -0.127 | -0.356 | 0.00805 | 9.66 | 0.0299 | 304 | -- | -- |
| 14.99 | 0.18 | 12.5 | -0.515 | 0.735 | -0.523 | -0.234 | -- | 0.00947 | 9.66 | -1.556e-05 | 315 | -- | -- |
| 14.84 | 0.179 | 12.5 | -0.526 | 0.741 | -0.507 | -- | -0.403 | 0.00534 | 9.61 | 0.0002733 | 304 | -- | -- |
| 15.2 | 0.182 | 12.5 | -0.522 | 0.742 | -0.511 | -- | -- | 0.00887 | 9.62 | -0.0007326 | 304 | -- | -- |
| 21.91 | 0.218 | 12.5 | -0.476 | -- | -0.836 | -- | -0.0697 | 0.0846 | -- | -0.4679 | 887 | -- | -- |
| 18.17 | 0.2 | 12.5 | -0.541 | 0.741 | -- | -0.103 | -- | -0.0285 | 7.92 | -- | -- | -- | -- |
| 18.2 | 0.2 | 12.5 | -0.544 | 0.742 | -- | -- | -- | -0.0285 | 7.91 | -- | -- | -- | -- |
| 21.89 | 0.218 | 12.5 | -0.473 | -- | -0.854 | -- | -- | 0.0784 | -- | -6.261 | 883 | -- | -- |
| 22.23 | 0.22 | 12.4 | -- | 0.694 | -0.573 | -- | -- | 0.0783 | 10 | -14.48 | 379 | -- | -- |
| 48.12 | 0.324 | 12.5 | -0.536 | -- | -- | -- | -- | -0.0186 | -- | -- | -- | -- | -- |
| 26 | 0.239 | 12.5 | -- | 0.738 | -- | -- | -- | 0.0321 | 7.97 | -- | -- | -- | -- |
| 27.66 | 0.245 | 12.4 | -- | -- | -0.885 | -- | -- | 0.137 | -- | -7.391 | 909 | -- | -- |
| 55.69 | 0.348 | 12.5 | -- | -- | -- | -- | -- | 0.0409 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.41 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 7 | 14.78 | radiation | 1 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 9 | 14.81 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 10 |
| 10 | 14.81 | radiation | 40 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 16 | 14.87 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 23 |
| 19 | 14.88 | humidity | 60 | 270 | > th | dose independent | rect. | 3 | 18 |
| 25 | 14.92 | radiation | 1 | 270 | > th | dose dependent | rect. | 6 | 12 |
| 38 | 14.93 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 108 | 14.94 | humidity | 60 | 270 | > th | dose independent | rect. | 2 | 20 |
| 144 | 14.99 | radiation | 40 | 270 | < th | dose dependent | no | NA | NA |
| 160 | 15.03 | radiation | 40 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 176 | 15.09 | radiation | 1 | 270 | > th | dose dependent | sin | 23 | NA |
| 215 | 15.13 | radiation | 1 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 353 | 15.18 | radiation | 20 | 270 | > th | dose independent | rect. | 11 | 23 |
| 357 | 15.19 | radiation | 40 | 720 | < th | dose independent | rect. | 18 | 19 |
| 358 | 15.19 | humidity | 50 | 270 | > th | dose dependent | rect. | 3 | 18 |
| 376 | 15.22 | radiation | 40 | 270 | < th | dose independent | rect. | 16 | 23 |
| 382 | 15.23 | radiation | 20 | 270 | < th | dose independent | rect. | 14 | 22 |
| 399 | 15.26 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 440 | 15.28 | radiation | 40 | 720 | < th | dose independent | rect. | 18 | 17 |
| 454 | 15.29 | radiation | 40 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 460 | 15.30 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 23 |
| 470 | 15.31 | radiation | 1 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 489 | 15.34 | humidity | 60 | 10 | > th | dose independent | rect. | 5 | 19 |
| 626 | 15.37 | radiation | 40 | 720 | < th | dose independent | sin | 9 | NA |
| 635 | 15.38 | radiation | 1 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 647 | 15.39 | radiation | 30 | 270 | > th | dose dependent | sin | 12 | NA |
| 683 | 15.40 | radiation | 20 | 270 | < th | dose independent | no | NA | NA |
| 688 | 15.40 | humidity | 50 | 270 | > th | dose dependent | rect. | 2 | 21 |
| 693 | 15.41 | radiation | 40 | 270 | < th | dose dependent | sin | 0 | NA |
| 694 | 15.41 | humidity | 90 | 270 | < th | dose dependent | rect. | 8 | 9 |
| 712 | 15.41 | humidity | 80 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 737 | 15.44 | radiation | 1 | 720 | > th | dose dependent | sin | 11 | NA |
| 762 | 15.46 | radiation | 20 | 270 | > th | dose independent | no | NA | NA |
| 763 | 15.46 | radiation | 20 | 270 | > th | dose independent | rect. | 7 | 10 |
| 884 | 15.47 | radiation | 30 | 720 | > th | dose dependent | sin | 10 | NA |
| 898 | 15.48 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 18 |
| 902 | 15.48 | radiation | 40 | 270 | < th | dose independent | rect. | 14 | 23 |
| 903 | 15.48 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 916 | 15.49 | radiation | 40 | 270 | > th | dose independent | sin | 12 | NA |
| 919 | 15.49 | radiation | 40 | 720 | < th | dose independent | rect. | 1 | 14 |
| 971 | 15.51 | humidity | 90 | 90 | < th | dose dependent | rect. | 8 | 12 |