BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0631100 Os02g0631100|AK105126
         (119 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0631100  Photosystem II oxygen evolving complex protein...   240   1e-64
Os04g0522800  Photosystem II oxygen evolving complex protein...   136   3e-33

>Os02g0631100 Photosystem II oxygen evolving complex protein PsbQ family protein
          Length = 119

 Score =  240 bits (613), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MDRGVELMGCVCRIKNCAVELLEMEEDLVIGMDDDDRDLFWSELQLKTTFLYIDLSRVIS 60
           MDRGVELMGCVCRIKNCAVELLEMEEDLVIGMDDDDRDLFWSELQLKTTFLYIDLSRVIS
Sbjct: 1   MDRGVELMGCVCRIKNCAVELLEMEEDLVIGMDDDDRDLFWSELQLKTTFLYIDLSRVIS 60

Query: 61  SSESDERREALTLLTNKLFYFLEELTDAVTSGSVSFTKLCYGDAAQALREVVAFLAPPQ 119
           SSESDERREALTLLTNKLFYFLEELTDAVTSGSVSFTKLCYGDAAQALREVVAFLAPPQ
Sbjct: 61  SSESDERREALTLLTNKLFYFLEELTDAVTSGSVSFTKLCYGDAAQALREVVAFLAPPQ 119



>Os04g0522800 Photosystem II oxygen evolving complex protein PsbQ family protein
          Length = 118

 Score =  136 bits (343), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/119 (57%), Positives = 85/119 (71%), Gaps = 1/119 (0%)

Query: 1   MDRGVELMGCVCRIKNCAVELLEMEEDLVIGMDDDDRDLFWSELQLKTTFLYIDLSRVIS 60
           MD G+EL GC+CRI NCAVEL  MEEDLVI  D+D  DL   +L+LK TFLYIDL RVI 
Sbjct: 1   MDCGIELKGCICRINNCAVELFSMEEDLVID-DEDSWDLLARDLRLKATFLYIDLGRVIC 59

Query: 61  SSESDERREALTLLTNKLFYFLEELTDAVTSGSVSFTKLCYGDAAQALREVVAFLAPPQ 119
           S E DE ++ LT L NK FYF++ELT+AV+S S+   ++CY D    LREV++ L P Q
Sbjct: 60  SCEIDEHKKMLTGLANKFFYFMDELTNAVSSRSIPLMQVCYSDTTLLLREVLSALVPSQ 118



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,705,774
Number of extensions: 125097
Number of successful extensions: 396
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 2
Length of query: 119
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 34
Effective length of database: 12,597,611
Effective search space: 428318774
Effective search space used: 428318774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)