Os04g0522800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Photosystem II oxygen evolving complex protein PsbQ family protein.
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Os04g0522800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Photosystem II oxygen evolving complex protein PsbQ family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.3 | 0.267 | 10.3 | 0.744 | 0.471 | -0.724 | -0.643 | -0.466 | 0.168 | 18.2 | 5.229 | 9 | -- | -- |
| 32.76 | 0.267 | 10.3 | 0.728 | 0.47 | -0.751 | -0.653 | -- | 0.167 | 17.9 | 4.637 | 8 | -- | -- |
| 33.3 | 0.269 | 10.3 | 0.748 | 0.469 | -0.699 | -- | -0.411 | 0.166 | 18.4 | 5.466 | 8 | -- | -- |
| 33.69 | 0.27 | 10.3 | 0.733 | 0.469 | -0.687 | -- | -- | 0.163 | 18.5 | 5.436 | 8 | -- | -- |
| 44.58 | 0.311 | 10.3 | 0.744 | -- | -0.699 | -- | -0.348 | 0.164 | -- | 2.998 | 8 | -- | -- |
| 40.98 | 0.3 | 10.3 | 0.725 | 0.593 | -- | -0.0547 | -- | 0.168 | 20.8 | -- | -- | -- | -- |
| 40.99 | 0.3 | 10.3 | 0.727 | 0.592 | -- | -- | -- | 0.168 | 20.8 | -- | -- | -- | -- |
| 44.88 | 0.312 | 10.3 | 0.731 | -- | -0.711 | -- | -- | 0.158 | -- | 2.9 | 6 | -- | -- |
| 47.79 | 0.322 | 10.3 | -- | 0.451 | -0.672 | -- | -- | 0.0844 | 18.6 | 4.782 | 7 | -- | -- |
| 60.93 | 0.365 | 10.3 | 0.726 | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
| 54.92 | 0.347 | 10.3 | -- | 0.591 | -- | -- | -- | 0.0873 | 20.9 | -- | -- | -- | -- |
| 58.5 | 0.356 | 10.3 | -- | -- | -0.716 | -- | -- | 0.0758 | -- | 2.572 | 7 | -- | -- |
| 74.86 | 0.404 | 10.3 | -- | -- | -- | -- | -- | 0.0831 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.80 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 7 |
| 4 | 31.09 | radiation | 1 | 90 | > th | dose dependent | rect. | 18 | 20 |
| 18 | 31.27 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 19 | 31.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 25 | 31.46 | radiation | 1 | 90 | > th | dose dependent | sin | 4 | NA |
| 42 | 31.47 | radiation | 1 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 62 | 31.59 | radiation | 1 | 10 | > th | dose dependent | sin | 3 | NA |
| 162 | 31.99 | radiation | 40 | 10 | < th | dose dependent | sin | 3 | NA |
| 216 | 32.21 | radiation | 1 | 270 | > th | dose dependent | sin | 9 | NA |
| 223 | 32.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 268 | 32.36 | radiation | 40 | 270 | < th | dose dependent | sin | 8 | NA |
| 273 | 32.38 | radiation | 40 | 90 | < th | dose dependent | sin | 5 | NA |
| 278 | 32.41 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 6 |
| 455 | 32.68 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 4 |
| 475 | 32.69 | radiation | 10 | 10 | > th | dose dependent | no | NA | NA |
| 606 | 32.75 | radiation | 10 | 30 | > th | dose independent | rect. | 8 | 6 |
| 720 | 32.81 | radiation | 40 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 737 | 32.84 | radiation | 30 | 90 | < th | dose independent | rect. | 3 | 14 |
| 746 | 32.90 | radiation | 40 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 747 | 32.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 16 |
| 754 | 32.92 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 17 |
| 777 | 32.95 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 15 |
| 784 | 32.99 | radiation | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 785 | 32.99 | radiation | 30 | 10 | < th | dose independent | rect. | 3 | 15 |
| 816 | 33.05 | radiation | 20 | 270 | > th | dose independent | rect. | 7 | 4 |
| 848 | 33.06 | radiation | 40 | 10 | < th | dose dependent | no | NA | NA |
| 853 | 33.07 | radiation | 30 | 10 | < th | dose independent | rect. | 12 | 20 |
| 887 | 33.10 | radiation | 30 | 10 | < th | dose independent | sin | 6 | NA |
| 888 | 33.10 | radiation | 20 | 270 | > th | dose independent | rect. | 9 | 2 |
| 903 | 33.11 | temperature | 20 | 270 | > th | dose independent | rect. | 8 | 2 |
| 920 | 33.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 14 |
| 926 | 33.17 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 6 |
| 946 | 33.19 | radiation | 30 | 90 | < th | dose independent | sin | 7 | NA |
| 968 | 33.20 | radiation | 40 | 10 | < th | dose dependent | rect. | 9 | 23 |