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Os02g0631100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Photosystem II oxygen evolving complex protein PsbQ family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.47 (0.0304) R2 : 0.318
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.47 (0.109) R2dE : 0.317 R2E : 0.318
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00442 (0.0664) R2dN8 : 0.000112 R2N8 : 0.000996
σ : 0.565
deviance : 147.17
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 19
memory length : 10955
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
130.09 0.536 6.44 0.752 0.248 0.864 -0.585 -1.02 0.239 23.6 19.32 854 -- --
131.71 0.535 6.42 0.846 0.227 1.04 -0.829 -- 0.277 23 19.3 931 -- --
131.32 0.534 6.45 0.755 0.26 0.857 -- -1.18 0.225 23.9 19.3 890 -- --
133.97 0.539 6.42 0.869 0.242 1.14 -- -- 0.266 0.647 19.08 904 -- --
135.19 0.542 6.45 0.722 -- 0.953 -- -1.16 0.221 -- 19.31 889 -- --
152.71 0.579 6.38 1.24 0.355 -- -0.943 -- 0.441 23.3 -- -- -- --
156.1 0.585 6.38 1.27 0.368 -- -- -- 0.442 0.211 -- -- -- --
137.44 0.546 6.42 0.851 -- 1.24 -- -- 0.255 -- 19.06 911 -- --
143.48 0.558 6.45 -- 0.352 1.48 -- -- 0.0562 1.18 19.6 3579 -- --
164.63 0.6 6.37 1.29 -- -- -- -- 0.448 -- -- -- -- --
198.95 0.66 6.41 -- 0.386 -- -- -- 0.3 0.39 -- -- -- --
147.17 0.565 6.47 -- -- 1.47 -- -- 0.00442 -- 19 10955 -- --
208.32 0.674 6.41 -- -- -- -- -- 0.305 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 128.72 temperature 25 720 < th dose dependent rect. 17 16
4 128.95 temperature 25 720 < th dose dependent sin 11 NA
10 129.09 temperature 20 1440 < th dose independent rect. 22 1
12 129.16 temperature 20 1440 < th dose independent rect. 5 2
13 129.17 humidity 80 14400 > th dose dependent rect. 14 1
15 129.23 temperature 20 1440 > th dose independent rect. 6 1
26 129.45 temperature 20 720 < th dose independent sin 9 NA
27 129.48 temperature 20 1440 > th dose independent rect. 5 3
29 129.53 temperature 20 1440 > th dose independent rect. 22 1
32 129.56 temperature 20 720 > th dose independent rect. 19 18
35 129.64 temperature 20 720 < th dose independent rect. 22 11
48 129.86 temperature 15 720 > th dose dependent rect. 19 12
49 129.87 temperature 20 720 < th dose independent rect. 19 15
50 129.87 temperature 20 720 < th dose independent rect. 22 16
73 130.04 temperature 20 720 > th dose independent rect. 11 20
77 130.08 temperature 20 720 > th dose independent sin 10 NA
96 130.20 temperature 20 720 > th dose independent rect. 19 12
101 130.22 temperature 20 720 > th dose independent rect. 17 14
102 130.23 humidity 90 14400 > th dose dependent rect. 3 14
106 130.27 atmosphere 1015 43200 < th dose independent rect. 19 1
110 130.28 temperature 20 1440 > th dose independent rect. 22 12
147 130.40 temperature 20 720 > th dose independent rect. 15 16
163 130.45 atmosphere 1015 43200 > th dose independent rect. 19 1
177 130.51 temperature 20 1440 < th dose dependent rect. 4 1
216 130.65 wind 1 14400 > th dose independent rect. 23 3
225 130.66 humidity 90 14400 > th dose dependent sin 3 NA
241 130.71 temperature 20 1440 < th dose independent rect. 3 6
285 130.82 atmosphere 1015 43200 > th dose independent rect. 18 3
323 130.90 wind 3 43200 > th dose independent rect. 21 2
326 130.91 wind 1 14400 < th dose independent rect. 23 3
328 130.91 temperature 20 1440 > th dose independent rect. 1 9
348 130.96 wind 3 43200 < th dose independent rect. 21 2
349 130.96 temperature 20 1440 > th dose independent rect. 3 6
363 130.98 atmosphere 1015 43200 > th dose dependent rect. 20 1
367 130.99 atmosphere 1015 43200 > th dose dependent rect. 12 10
370 131.00 atmosphere 1015 43200 > th dose dependent rect. 17 5
382 131.01 atmosphere 1015 43200 > th dose dependent rect. 14 9
399 131.03 humidity 90 14400 > th dose independent rect. 23 18
403 131.03 atmosphere 1015 43200 > th dose dependent rect. 12 6
413 131.05 atmosphere 995 43200 > th dose independent rect. 23 15
429 131.06 atmosphere 995 43200 < th dose dependent rect. 13 21
439 131.08 atmosphere 995 43200 > th dose independent rect. 1 12
455 131.10 atmosphere 995 43200 < th dose dependent rect. 17 17
459 131.11 atmosphere 995 43200 < th dose dependent sin 8 NA
472 131.14 atmosphere 995 43200 < th dose independent rect. 23 15
482 131.15 atmosphere 1015 43200 < th dose independent rect. 16 5
486 131.15 atmosphere 995 43200 < th dose dependent rect. 23 11
547 131.22 temperature 20 720 < th dose independent rect. 22 6
581 131.25 atmosphere 995 43200 < th dose independent rect. 1 12
613 131.29 atmosphere 1015 43200 > th dose dependent sin 17 NA
636 131.32 atmosphere 995 43200 < th dose independent rect. 3 7
642 131.32 atmosphere 995 43200 < th dose independent rect. 18 20
654 131.33 atmosphere 995 43200 < th dose dependent rect. 2 7
656 131.34 atmosphere 995 43200 < th dose independent rect. 4 5
659 131.34 atmosphere 995 43200 < th dose independent rect. 2 10
674 131.35 atmosphere 1015 43200 > th dose dependent rect. 17 1
681 131.36 wind 9 43200 > th dose independent rect. 6 10
737 131.40 wind 9 43200 > th dose independent sin 2 NA
738 131.40 atmosphere 995 43200 < th dose independent sin 6 NA
739 131.40 atmosphere 995 43200 < th dose independent rect. 5 3
742 131.40 atmosphere 995 43200 > th dose independent rect. 3 8
749 131.40 atmosphere 995 43200 < th dose dependent rect. 10 20
753 131.41 atmosphere 995 43200 > th dose independent rect. 4 6
777 131.42 atmosphere 995 43200 > th dose independent rect. 19 19
783 131.42 humidity 90 14400 > th dose dependent rect. 2 23
806 131.44 wind 9 43200 > th dose dependent sin 20 NA
807 131.44 atmosphere 1015 43200 > th dose dependent rect. 23 1
815 131.45 wind 9 43200 < th dose independent rect. 6 9
822 131.45 wind 3 43200 > th dose dependent rect. 23 1
823 131.45 wind 3 43200 < th dose dependent rect. 23 1
824 131.45 wind 7 43200 > th dose dependent rect. 6 10
837 131.46 wind 9 43200 > th dose independent rect. 6 21
839 131.46 wind 9 43200 > th dose independent rect. 21 22
845 131.46 wind 9 43200 > th dose dependent rect. 9 10
849 131.46 humidity 90 14400 > th dose dependent rect. 11 16
853 131.47 temperature 20 14400 > th dose independent rect. 21 1
854 131.47 temperature 20 14400 > th dose independent rect. 19 4
902 131.50 wind 9 43200 > th dose independent rect. 8 6
924 131.51 wind 9 43200 > th dose independent rect. 6 18
963 131.53 humidity 90 14400 > th dose dependent no NA NA
968 131.54 atmosphere 995 43200 > th dose independent rect. 5 4
985 131.54 humidity 90 14400 > th dose dependent rect. 10 23
986 131.55 wind 9 43200 < th dose independent sin 2 NA
994 131.55 wind 9 43200 > th dose independent rect. 13 23
995 131.55 wind 9 43200 > th dose independent rect. 15 23