BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0631100 Os02g0631100|AK105126
         (119 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01440.1  | chr3:168478-169407 FORWARD LENGTH=221               58   1e-09

>AT3G01440.1 | chr3:168478-169407 FORWARD LENGTH=221
          Length = 220

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 5/108 (4%)

Query: 9   GCVCRIKNCAVELLEMEEDLVIGMDDDDRDLFWSELQLKTTFLYIDLSRVISSSESDERR 68
           G + R+K  A +LL ME+  +IG   D  +     L+LK+TFL+ D   +IS++ S E +
Sbjct: 118 GRMYRVKKNAFDLLAMED--LIG--PDTLNYVKKYLRLKSTFLFYDFDNLISAAAS-EDK 172

Query: 69  EALTLLTNKLFYFLEELTDAVTSGSVSFTKLCYGDAAQALREVVAFLA 116
           + LT L N+LF   E+L DA  + +++ T+ CY D    L+EV+  +A
Sbjct: 173 QPLTDLANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,458,603
Number of extensions: 88679
Number of successful extensions: 297
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 34
Effective length of database: 8,776,209
Effective search space: 298391106
Effective search space used: 298391106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)