BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0629000 Os02g0629000|AK062480
         (170 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0629000  Protein of unknown function DUF584 family protein   213   4e-56
Os04g0520700  Protein of unknown function DUF584 family protein   110   4e-25

>Os02g0629000 Protein of unknown function DUF584 family protein
          Length = 170

 Score =  213 bits (543), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 116/170 (68%), Positives = 116/170 (68%)

Query: 1   MARSTRSAATEQAYSRFAPTAASSXXXXXXXXXXFDEFDESDIWGSFEPAAEVAESPRAA 60
           MARSTRSAATEQAYSRFAPTAASS          FDEFDESDIWGSFEPAAEVAESPRAA
Sbjct: 1   MARSTRSAATEQAYSRFAPTAASSRGRGVGGGNGFDEFDESDIWGSFEPAAEVAESPRAA 60

Query: 61  RHQVXXXXXXXXXXXXXXXXXXXXXXLPVNIPDWSKILGDEYRGHHXXXXXXXXXXXXXX 120
           RHQV                      LPVNIPDWSKILGDEYRGHH              
Sbjct: 61  RHQVPAARPPGRKAAAAASKPAAHGSLPVNIPDWSKILGDEYRGHHAGDWEADDVDDDDI 120

Query: 121 XXXXXXXXLPPHELAWRRRAASLSVHEDGMGIGRTLKVRDAVWKKTGFQA 170
                   LPPHELAWRRRAASLSVHEDGMGIGRTLKVRDAVWKKTGFQA
Sbjct: 121 DAASAVAVLPPHELAWRRRAASLSVHEDGMGIGRTLKVRDAVWKKTGFQA 170



>Os04g0520700 Protein of unknown function DUF584 family protein
          Length = 174

 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/181 (43%), Positives = 87/181 (48%), Gaps = 20/181 (11%)

Query: 1   MARSTRSAATEQAYSRFAPTAASSXXXXXXXXXXFDEFDESDIWGSFEPAAEVAESPRAA 60
           MA S RSAA + AY  FAP+  ++           DEFDESD+WGS+  AA V  SP  A
Sbjct: 1   MAGSARSAAAKHAYRMFAPSRGAAARCPGSPGA--DEFDESDVWGSYG-AAGVESSP--A 55

Query: 61  RHQVXXXXXXXXXXXXXXXXXXXXXXLPVNIPDWSKILGDEYRGHHXXXXX------XXX 114
                                     LPVNIPDW KILG EYR H               
Sbjct: 56  ELGARGRAIPSARAGRKAPLDRAAGSLPVNIPDWQKILGVEYRDHQAAAAEWELQGDGDD 115

Query: 115 XXXXXXXXXXXXXXLPPHELAWRRRAASLSVHEDGMGIGRTLK------VRDAVWKKTGF 168
                         +PPHELAWR RAASLSVHE   GIGRTLK      VRDAVWKKTGF
Sbjct: 116 DYEYGKVAGVGGVVIPPHELAWRGRAASLSVHE---GIGRTLKGRDLSRVRDAVWKKTGF 172

Query: 169 Q 169
           +
Sbjct: 173 E 173



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.129    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,337,469
Number of extensions: 106544
Number of successful extensions: 322
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 3
Length of query: 170
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 76
Effective length of database: 12,127,685
Effective search space: 921704060
Effective search space used: 921704060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)