BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0621600 Os02g0621600|AK108575
         (156 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0621600  Conserved hypothetical protein                      150   3e-37
Os04g0512500  Conserved hypothetical protein                       77   4e-15

>Os02g0621600 Conserved hypothetical protein
          Length = 156

 Score =  150 bits (380), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/156 (57%), Positives = 89/156 (57%)

Query: 1   MSICARAEPPRGGGTLGKRKERDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFV 60
           MSICARAEPPRGGGTLGKRKERD                                   FV
Sbjct: 1   MSICARAEPPRGGGTLGKRKERDRPSSEEQRAPPPPPPPLFPAMSARPQPPRPAHPARFV 60

Query: 61  KPMXXXXXXXXXXXXXXXXXLMAGYLAHEFLRSGTLLGERPESNSKXXXXXXXXXXXXXX 120
           KPM                 LMAGYLAHEFLRSGTLLGERPESNSK              
Sbjct: 61  KPMPPPPPPFPKGGGGSSFKLMAGYLAHEFLRSGTLLGERPESNSKAPAPAASAGPAAPD 120

Query: 121 XRTRYAEASLLLMAGGARVPGVVNPTQLGHWLRIKE 156
            RTRYAEASLLLMAGGARVPGVVNPTQLGHWLRIKE
Sbjct: 121 PRTRYAEASLLLMAGGARVPGVVNPTQLGHWLRIKE 156



>Os04g0512500 Conserved hypothetical protein
          Length = 131

 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 47/82 (57%), Gaps = 6/82 (7%)

Query: 81  LMAGYLAHEFLRSGTLLGERPESNSKXXXXX------XXXXXXXXXXRTRYAEASLLLMA 134
           L+AG+LAHEFL  GTL G R E                         R RYAE S LLMA
Sbjct: 50  LLAGHLAHEFLTRGTLQGRRVEPTKPSQAAALHPGEPVPEPEPDAAKRRRYAEVSWLLMA 109

Query: 135 GGARVPGVVNPTQLGHWLRIKE 156
            GARVPGVVNPTQLG WL+IKE
Sbjct: 110 SGARVPGVVNPTQLGRWLQIKE 131



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,545,519
Number of extensions: 64828
Number of successful extensions: 116
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 3
Length of query: 156
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 64
Effective length of database: 12,232,113
Effective search space: 782855232
Effective search space used: 782855232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)