BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0620600 Os02g0620600|AK107204
(496 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0620600 Ammonium transporter family protein 842 0.0
Os02g0620500 Similar to Ammonium transporter Amt1 616 e-176
Os04g0350433 75 1e-13
>Os02g0620600 Ammonium transporter family protein
Length = 496
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/496 (86%), Positives = 428/496 (86%)
Query: 1 MATCADTLGPLLGTAAANATDYLCNQFADTTSAVDSTYLLFSAYLVFAMQLGFAMLCAGS 60
MATCADTLGPLLGTAAANATDYLCNQFADTTSAVDSTYLLFSAYLVFAMQLGFAMLCAGS
Sbjct: 1 MATCADTLGPLLGTAAANATDYLCNQFADTTSAVDSTYLLFSAYLVFAMQLGFAMLCAGS 60
Query: 61 VRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXXPSNGFIGKHFFGLKQVPQVGFDYSF 120
VRAKNTMNIMLTNVLD PSNGFIGKHFFGLKQVPQVGFDYSF
Sbjct: 61 VRAKNTMNIMLTNVLDAAAGALFYYLFGFAFAFGAPSNGFIGKHFFGLKQVPQVGFDYSF 120
Query: 121 FLFQWXXXXXXXXXXXXXXXERTQFVAYLIYSAFLTGFVYPVVSHWIWSADGWASASRTS 180
FLFQW ERTQFVAYLIYSAFLTGFVYPVVSHWIWSADGWASASRTS
Sbjct: 121 FLFQWAFAIAAAGITSGSIAERTQFVAYLIYSAFLTGFVYPVVSHWIWSADGWASASRTS 180
Query: 181 GSLLFGSGVIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDHAGRSVALRGHSASLVVLG 240
GSLLFGSGVIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDHAGRSVALRGHSASLVVLG
Sbjct: 181 GSLLFGSGVIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDHAGRSVALRGHSASLVVLG 240
Query: 241 SFLLWFGWYGFNPGSFLTILKSYGPPGSIHGQWSAVGRXXXXXXXXXXXXXXXXXFGKRL 300
SFLLWFGWYGFNPGSFLTILKSYGPPGSIHGQWSAVGR FGKRL
Sbjct: 241 SFLLWFGWYGFNPGSFLTILKSYGPPGSIHGQWSAVGRTAVTTTLAGSTAALTTLFGKRL 300
Query: 301 QTGHWNVIDVCNGLLGGFAAITAGCSVVDPWAAIICGFVSAWVLIGLNALAARLKFDDPL 360
QTGHWNVIDVCNGLLGGFAAITAGCSVVDPWAAIICGFVSAWVLIGLNALAARLKFDDPL
Sbjct: 301 QTGHWNVIDVCNGLLGGFAAITAGCSVVDPWAAIICGFVSAWVLIGLNALAARLKFDDPL 360
Query: 361 EAAQLHGGCGAWGVIFTALFARKEYVDQIFGQXXXXXXXXXXXXXXXXXAHIVVILVIAA 420
EAAQLHGGCGAWGVIFTALFARKEYVDQIFGQ AHIVVILVIAA
Sbjct: 361 EAAQLHGGCGAWGVIFTALFARKEYVDQIFGQPGRPYGLFMGGGGRLLGAHIVVILVIAA 420
Query: 421 WVSFTMAPLFLVLNKLGLLRISAEDEMAGMDQTRHGGFAYAYHDDDASGKPDRSVGGFML 480
WVSFTMAPLFLVLNKLGLLRISAEDEMAGMDQTRHGGFAYAYHDDDASGKPDRSVGGFML
Sbjct: 421 WVSFTMAPLFLVLNKLGLLRISAEDEMAGMDQTRHGGFAYAYHDDDASGKPDRSVGGFML 480
Query: 481 KSAHGTQVAAEMGGHV 496
KSAHGTQVAAEMGGHV
Sbjct: 481 KSAHGTQVAAEMGGHV 496
>Os02g0620500 Similar to Ammonium transporter Amt1
Length = 498
Score = 616 bits (1589), Expect = e-176, Method: Compositional matrix adjust.
Identities = 313/468 (66%), Positives = 344/468 (73%), Gaps = 4/468 (0%)
Query: 1 MATCADTLGPLLGTAAANATD---YLCNQFADTTSAVDSTYLLFSAYLVFAMQLGFAMLC 57
MATC D+LGPLLG AAN+TD Y+CN+F DT+SAVD+TYLLFSAYLVFAMQLGFAMLC
Sbjct: 1 MATCLDSLGPLLG-GAANSTDAANYICNRFTDTSSAVDATYLLFSAYLVFAMQLGFAMLC 59
Query: 58 AGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXXPSNGFIGKHFFGLKQVPQVGFD 117
AGSVRAKN+MNIMLTNVLD PS GFIGK FFGLK +PQ G+D
Sbjct: 60 AGSVRAKNSMNIMLTNVLDAAAGALFYYLFGFAFAFGTPSKGFIGKQFFGLKHMPQTGYD 119
Query: 118 YSFFLFQWXXXXXXXXXXXXXXXERTQFVAYLIYSAFLTGFVYPVVSHWIWSADGWASAS 177
Y FFLFQW ERT+F AYLIYSAFLTGFVYPVVSHW WS DGWASA
Sbjct: 120 YDFFLFQWAFAIAAAGITSGSIAERTRFSAYLIYSAFLTGFVYPVVSHWFWSTDGWASAG 179
Query: 178 RTSGSLLFGSGVIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDHAGRSVALRGHSASLV 237
R +G LLF SGVIDFAGSGVVH+VGG+AGLWGA IEGPRIGRFD AGR+VA++GHSASLV
Sbjct: 180 RLTGPLLFKSGVIDFAGSGVVHLVGGIAGLWGAFIEGPRIGRFDAAGRTVAMKGHSASLV 239
Query: 238 VLGSFLLWFGWYGFNPGSFLTILKSYGPPGSIHGQWSAVGRXXXXXXXXXXXXXXXXXFG 297
VLG+FLLWFGW+GFNPGSF TI K YG G+I GQWSAVGR +G
Sbjct: 240 VLGTFLLWFGWFGFNPGSFTTISKIYGESGTIDGQWSAVGRTAVTTSLAGSVAALTTLYG 299
Query: 298 KRLQTGHWNVIDVCNGLLGGFAAITAGCSVVDPWAAIICGFVSAWVLIGLNALAARLKFD 357
KR TGHWNV DVCNGLLGGFAAITAGCSVVDPWA++ICGFVSAWVLIG N L+ LKFD
Sbjct: 300 KRWLTGHWNVTDVCNGLLGGFAAITAGCSVVDPWASVICGFVSAWVLIGCNKLSLILKFD 359
Query: 358 DPLEAAQLHGGCGAWGVIFTALFARKEYVDQIFGQXXXXXXXXXXXXXXXXXAHIVVILV 417
DPLEA QLH GCGAWG+IFTALFAR+EYV+ I+G AHIV ILV
Sbjct: 360 DPLEATQLHAGCGAWGIIFTALFARREYVELIYGVPGRPYGLFMGGGGRLLAAHIVQILV 419
Query: 418 IAAWVSFTMAPLFLVLNKLGLLRISAEDEMAGMDQTRHGGFAYAYHDD 465
I WVS TM LF VL++ GLLR+S EM GMD T HGGF Y D+
Sbjct: 420 IVGWVSATMGTLFYVLHRFGLLRVSPATEMEGMDPTCHGGFGYVDEDE 467
>Os04g0350433
Length = 145
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/39 (92%), Positives = 37/39 (94%)
Query: 420 AWVSFTMAPLFLVLNKLGLLRISAEDEMAGMDQTRHGGF 458
AWVSFTMA LFLVLNKLGLLRISAED+MAGMDQTRHGG
Sbjct: 2 AWVSFTMALLFLVLNKLGLLRISAEDKMAGMDQTRHGGL 40
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.140 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,122,448
Number of extensions: 583416
Number of successful extensions: 1595
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1590
Number of HSP's successfully gapped: 3
Length of query: 496
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 391
Effective length of database: 11,553,331
Effective search space: 4517352421
Effective search space used: 4517352421
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)