Os02g0620600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ammonium transporter family protein.
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Os02g0620600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ammonium transporter family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.94 | 0.467 | 8.96 | 0.0748 | 2.37 | -1.48 | -1.02 | 6.39 | 0.429 | 8.49 | 26 | 4462 | -- | -- |
| 113.48 | 0.496 | 8.84 | 0.969 | 2.36 | -1.49 | -0.987 | -- | 0.46 | 8.45 | 21.7 | 9339 | -- | -- |
| 101.98 | 0.47 | 8.96 | 0.0447 | 2.37 | -1.5 | -- | 6.54 | 0.437 | 8.51 | 26.21 | 4480 | -- | -- |
| 115.71 | 0.501 | 8.81 | 1.17 | 2.36 | -1.34 | -- | -- | 0.569 | 8.49 | 21.6 | 8203 | -- | -- |
| 414.55 | 0.948 | 9.01 | 0.11 | -- | -1.44 | -- | 6.66 | 0.575 | -- | 26.94 | 4442 | -- | -- |
| 153.27 | 0.58 | 8.69 | 2.19 | 2.34 | -- | -1.07 | -- | 1.08 | 8.41 | -- | -- | -- | -- |
| 156.88 | 0.587 | 8.69 | 2.15 | 2.34 | -- | -- | -- | 1.09 | 8.45 | -- | -- | -- | -- |
| 424.27 | 0.959 | 8.86 | 1.2 | -- | -1.31 | -- | -- | 0.609 | -- | 21.6 | 8772 | -- | -- |
| 127.26 | 0.525 | 8.84 | -- | 2.46 | -1.55 | -- | -- | 0.564 | 8.35 | 19.7 | 25861 | -- | -- |
| 462.68 | 1.01 | 8.75 | 2.17 | -- | -- | -- | -- | 1.11 | -- | -- | -- | -- | -- |
| 279.22 | 0.782 | 8.75 | -- | 2.35 | -- | -- | -- | 0.845 | 8.38 | -- | -- | -- | -- |
| 423.51 | 0.958 | 8.9 | -- | -- | -2.16 | -- | -- | 0.464 | -- | 16.37 | 47520 | -- | -- |
| 586.43 | 1.13 | 8.81 | -- | -- | -- | -- | -- | 0.868 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.22 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 3 | 90.54 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 5 | 90.62 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 13 | 91.14 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 17 | 91.41 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 22 | 91.67 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 28 | 91.74 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 46 | 92.49 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 15 |
| 55 | 92.64 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 58 | 92.68 | humidity | 90 | 43200 | < th | dose independent | sin | 17 | NA |
| 70 | 93.06 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 16 |
| 103 | 93.67 | humidity | 90 | 43200 | > th | dose independent | sin | 17 | NA |
| 128 | 94.27 | humidity | 80 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 144 | 94.47 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 22 |
| 145 | 94.48 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 22 |
| 167 | 94.82 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 22 |
| 168 | 94.82 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 169 | 94.83 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 19 |
| 173 | 94.87 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 185 | 94.96 | humidity | 90 | 43200 | > th | dose dependent | rect. | 16 | 22 |
| 187 | 94.96 | humidity | 90 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 188 | 94.97 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 21 |
| 192 | 94.99 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 201 | 95.02 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 19 |
| 204 | 95.03 | humidity | 90 | 43200 | > th | dose dependent | rect. | 7 | 21 |
| 212 | 95.05 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 229 | 95.09 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 231 | 95.09 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 245 | 95.13 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 271 | 95.23 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 276 | 95.25 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 16 |
| 280 | 95.27 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 302 | 95.33 | humidity | 90 | 43200 | > th | dose dependent | sin | 17 | NA |
| 371 | 95.60 | humidity | 90 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 382 | 95.66 | humidity | 90 | 43200 | < th | dose independent | rect. | 15 | 22 |
| 422 | 95.83 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 425 | 95.85 | humidity | 90 | 43200 | > th | dose dependent | sin | 5 | NA |
| 482 | 96.10 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 16 |
| 500 | 96.19 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 528 | 96.29 | humidity | 80 | 43200 | > th | dose dependent | sin | 19 | NA |
| 541 | 96.32 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 587 | 96.48 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 8 |
| 610 | 96.61 | radiation | 10 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 616 | 96.65 | radiation | 10 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 635 | 96.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 645 | 96.75 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 652 | 96.77 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 682 | 96.93 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 691 | 96.96 | radiation | 10 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 808 | 97.39 | radiation | 10 | 43200 | < th | dose independent | sin | 6 | NA |
| 820 | 97.42 | radiation | 20 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 823 | 97.42 | radiation | 20 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 835 | 97.43 | radiation | 20 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 862 | 97.55 | radiation | 40 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 916 | 97.76 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 965 | 97.92 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 2 |