FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0620500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ammonium transporter Amt1;2 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.11 (0.031) R2 : 0.171
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.752 (0.0811) R2dC : 0.157 R2C : 0.154
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.173 (0.0652) R2dN8 : 0.0165 R2N8 : 0.014
σ : 0.584
deviance : 156.1
__
_____
C
peak time of C : 18.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.16 0.566 4.07 0.231 0.726 0.569 0.427 -0.794 -0.0437 18.5 1012 4363 -- --
147.3 0.565 4.09 0.138 0.746 0.597 0.246 -- -0.0684 18.4 1012 4327 -- --
145.6 0.562 4.07 0.21 0.727 0.576 -- -0.759 -0.0467 18.5 1012 4343 -- --
147.28 0.565 4.09 0.0461 0.725 0.597 -- -- -0.0839 18.5 1012 4292 -- --
173.04 0.613 4.05 0.198 -- 0.644 -- -0.778 -0.0541 -- 1012 4288 -- --
155.73 0.585 4.11 -0.0756 0.749 -- 0.293 -- -0.183 18.5 -- -- -- --
155.94 0.585 4.11 -0.0794 0.751 -- -- -- -0.182 18.4 -- -- -- --
174.73 0.616 4.07 0.0282 -- 0.671 -- -- -0.0946 -- 1012 4181 -- --
147.32 0.565 4.09 -- 0.727 0.599 -- -- -0.0933 18.5 1012 4239 -- --
185.22 0.636 4.09 -0.0985 -- -- -- -- -0.197 -- -- -- -- --
156.1 0.584 4.11 -- 0.752 -- -- -- -0.173 18.4 -- -- -- --
174.75 0.616 4.07 -- -- 0.669 -- -- -0.0991 -- 1012 4176 -- --
185.48 0.636 4.09 -- -- -- -- -- -0.186 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 139.64 precipitation 0.1 14400 < th dose independent rect. 4 4
2 139.64 precipitation 0.1 14400 < th dose dependent rect. 4 4
3 139.67 precipitation 0.1 14400 > th dose dependent rect. 4 4
4 139.71 precipitation 0.1 14400 > th dose independent rect. 4 4
8 139.84 temperature 25.0 30 > th dose independent rect. 6 8
12 140.44 precipitation 0.1 14400 > th dose independent rect. 5 1
14 140.49 precipitation 0.1 14400 < th dose independent rect. 5 1
15 140.49 precipitation 0.1 14400 < th dose dependent rect. 5 1
21 140.61 precipitation 0.1 14400 > th dose dependent rect. 5 1
23 140.70 temperature 30.0 10 < th dose dependent rect. 24 17
24 140.78 temperature 25.0 30 > th dose independent rect. 6 10
27 140.81 wind 7.0 43200 > th dose independent rect. 12 1
28 140.89 temperature 30.0 30 < th dose dependent rect. 24 12
40 141.32 wind 7.0 43200 < th dose independent rect. 12 1
48 141.45 wind 7.0 43200 > th dose dependent rect. 11 2
55 141.84 wind 3.0 30 < th dose independent rect. 6 18
58 141.90 humidity 60.0 14400 < th dose dependent rect. 12 1
59 141.98 wind 5.0 30 < th dose dependent rect. 6 18
60 141.98 temperature 25.0 90 < th dose dependent rect. 1 20
64 142.12 temperature 25.0 90 < th dose independent rect. 1 15
66 142.14 temperature 25.0 90 < th dose dependent rect. 4 17
67 142.15 radiation 10.0 14400 < th dose independent rect. 12 1
68 142.15 temperature 30.0 10 < th dose dependent rect. 24 22
72 142.24 wind 9.0 43200 < th dose independent rect. 18 2
91 142.35 temperature 15.0 10 > th dose dependent rect. 6 8
92 142.36 radiation 10.0 43200 < th dose dependent rect. 12 1
96 142.41 temperature 25.0 90 < th dose dependent sin 1 NA
104 142.47 wind 9.0 43200 > th dose independent rect. 18 2
119 142.56 temperature 30.0 10 < th dose dependent sin 3 NA
121 142.57 wind 9.0 43200 > th dose dependent rect. 18 2
141 142.76 humidity 60.0 14400 < th dose dependent rect. 15 23
144 142.77 humidity 60.0 14400 < th dose dependent rect. 11 22
145 142.78 humidity 60.0 14400 < th dose dependent rect. 8 8
178 142.81 temperature 25.0 90 < th dose dependent rect. 4 12
184 142.83 humidity 60.0 14400 < th dose dependent sin 1 NA
186 142.83 temperature 25.0 10 < th dose dependent rect. 4 13
189 142.84 radiation 10.0 4320 < th dose dependent rect. 3 2
253 142.89 temperature 25.0 10 < th dose dependent rect. 4 17
298 142.92 radiation 10.0 4320 < th dose dependent rect. 1 4
322 142.93 humidity 60.0 14400 < th dose dependent no NA NA
393 142.94 wind 7.0 10 < th dose dependent rect. 6 8
411 142.95 humidity 80.0 14400 > th dose independent rect. 20 2
442 143.06 radiation 10.0 43200 > th dose independent rect. 5 1
455 143.07 radiation 10.0 4320 < th dose independent rect. 3 2
459 143.08 wind 9.0 43200 < th dose independent rect. 24 1
464 143.12 wind 3.0 90 < th dose independent sin 21 NA
477 143.16 humidity 80.0 14400 < th dose independent rect. 21 1
480 143.17 radiation 30.0 43200 < th dose dependent rect. 11 1
496 143.24 radiation 10.0 4320 < th dose independent rect. 1 4
503 143.28 temperature 25.0 30 > th dose independent sin 1 NA
504 143.28 radiation 30.0 43200 > th dose independent rect. 11 1
507 143.28 temperature 15.0 10 > th dose dependent rect. 6 18
526 143.31 humidity 60.0 14400 < th dose independent rect. 11 1
528 143.31 humidity 70.0 14400 < th dose dependent sin 9 NA
532 143.32 wind 3.0 30 < th dose independent rect. 6 13
538 143.33 temperature 25.0 90 < th dose independent rect. 3 13
541 143.35 humidity 60.0 43200 > th dose independent rect. 14 1
564 143.41 radiation 40.0 14400 > th dose dependent rect. 9 1
581 143.43 humidity 50.0 43200 > th dose dependent rect. 9 1
588 143.45 humidity 50.0 43200 > th dose dependent rect. 9 9
604 143.50 radiation 1.0 4320 > th dose independent rect. 4 1
618 143.50 radiation 20.0 14400 < th dose independent rect. 16 16
621 143.50 radiation 1.0 4320 > th dose dependent rect. 4 1
640 143.52 humidity 60.0 14400 < th dose independent rect. 16 21
647 143.53 radiation 10.0 14400 < th dose independent rect. 12 18
672 143.54 humidity 60.0 43200 < th dose independent rect. 14 1
682 143.54 wind 5.0 30 < th dose dependent rect. 6 13
687 143.55 radiation 10.0 14400 < th dose independent rect. 12 6
689 143.56 temperature 25.0 30 < th dose independent sin 1 NA
714 143.59 wind 5.0 30 < th dose independent rect. 6 8
733 143.63 wind 9.0 14400 < th dose independent rect. 14 1
735 143.63 radiation 1.0 43200 > th dose dependent rect. 10 2
768 143.65 wind 5.0 14400 > th dose dependent rect. 14 1
794 143.66 humidity 50.0 43200 > th dose dependent rect. 14 4
811 143.68 humidity 50.0 43200 > th dose dependent rect. 16 2
820 143.68 temperature 15.0 270 > th dose dependent rect. 3 9
836 143.70 radiation 40.0 14400 < th dose dependent rect. 22 8
850 143.71 humidity 60.0 14400 < th dose independent rect. 8 5
855 143.72 radiation 10.0 4320 < th dose independent rect. 22 7
861 143.72 radiation 20.0 43200 < th dose dependent rect. 9 6
898 143.76 humidity 60.0 14400 < th dose independent sin 9 NA
903 143.76 wind 5.0 90 < th dose dependent sin 21 NA
941 143.78 radiation 20.0 14400 < th dose dependent rect. 19 11
947 143.79 radiation 40.0 14400 > th dose dependent sin 11 NA
959 143.80 humidity 70.0 14400 < th dose independent rect. 18 15
966 143.81 temperature 25.0 90 < th dose independent rect. 1 20
991 143.83 radiation 40.0 14400 > th dose dependent rect. 13 22
992 143.84 wind 7.0 14400 > th dose independent rect. 14 1