BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0614100 Os02g0614100|AK066917
(346 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0614100 Protein of unknown function DUF250 domain cont... 643 0.0
Os06g0188100 Protein of unknown function DUF250 domain cont... 109 2e-24
Os08g0107400 Similar to GDP-mannose transporter 67 2e-11
>Os02g0614100 Protein of unknown function DUF250 domain containing protein
Length = 346
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/346 (93%), Positives = 322/346 (93%)
Query: 1 MAKGGGALLPMSAEAXXXXXXXXXXXDDAALFKGSAMTRRGAVAALSYMACSVLLVMFNK 60
MAKGGGALLPMSAEA DDAALFKGSAMTRRGAVAALSYMACSVLLVMFNK
Sbjct: 1 MAKGGGALLPMSAEAGKGNGGGGGGGDDAALFKGSAMTRRGAVAALSYMACSVLLVMFNK 60
Query: 61 AALSSYNFPCANVITLLQMVCSTGLLYVLRRLKIISFTNSEPSVPSDALFFVPFRILLRT 120
AALSSYNFPCANVITLLQMVCSTGLLYVLRRLKIISFTNSEPSVPSDALFFVPFRILLRT
Sbjct: 61 AALSSYNFPCANVITLLQMVCSTGLLYVLRRLKIISFTNSEPSVPSDALFFVPFRILLRT 120
Query: 121 TPXXXXXXXXXXXXXESVRGVNVPMYTTLRRTTVVFTMTMEYFLAKQKHTPPIIGSVALI 180
TP ESVRGVNVPMYTTLRRTTVVFTMTMEYFLAKQKHTPPIIGSVALI
Sbjct: 121 TPLSLAYLLYMLASMESVRGVNVPMYTTLRRTTVVFTMTMEYFLAKQKHTPPIIGSVALI 180
Query: 181 VFGAFIAGARDLSFDARGYAIVFVANITTAVYLATINRIGKSSGLNSFGLMWCNGLVCGP 240
VFGAFIAGARDLSFDARGYAIVFVANITTAVYLATINRIGKSSGLNSFGLMWCNGLVCGP
Sbjct: 181 VFGAFIAGARDLSFDARGYAIVFVANITTAVYLATINRIGKSSGLNSFGLMWCNGLVCGP 240
Query: 241 SVLFLTYIQGDLKKAIEFPYLYSPGFQAVLLFSCMLAFLLNYTIFWNTILNSALTQSMCG 300
SVLFLTYIQGDLKKAIEFPYLYSPGFQAVLLFSCMLAFLLNYTIFWNTILNSALTQSMCG
Sbjct: 241 SVLFLTYIQGDLKKAIEFPYLYSPGFQAVLLFSCMLAFLLNYTIFWNTILNSALTQSMCG 300
Query: 301 NLKDFFTVGIGWVLFGGLPFDLLNVIGQGLGFLGSGLYAYCKIKGK 346
NLKDFFTVGIGWVLFGGLPFDLLNVIGQGLGFLGSGLYAYCKIKGK
Sbjct: 301 NLKDFFTVGIGWVLFGGLPFDLLNVIGQGLGFLGSGLYAYCKIKGK 346
>Os06g0188100 Protein of unknown function DUF250 domain containing protein
Length = 323
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 146/314 (46%), Gaps = 34/314 (10%)
Query: 44 AALSYMACSVLLVMFNKAALSSYNFPCANVITLLQMV-CSTGLLYVLRRLKIISFTNSEP 102
AA SY S+ +V NKA L Y A+ +TLL + +T L ++ +I+ + +
Sbjct: 16 AAFSYGIASMAMVFVNKAILMQY----AHSMTLLTLQQIATAL--IIHFGQILGVSKRKD 69
Query: 103 SVPSDALFFVPFRILLRTTPXXXXXXXXXXXXXESVRGVNVPMYTTLRRTTVVFTMTMEY 162
+ +P I S++GVN+PMY ++R T + +
Sbjct: 70 FSMATGRKLLPLSIFYNAN---------VAFALASLKGVNIPMYIAIKRLTPLAVLVAGC 120
Query: 163 FLAKQKHTPPIIGSVALI--VFGAFIAGARDLSFDARGYAIVFVANITTAVYLATINRIG 220
K K PP S+++I G IA D SFD GY++ + +YL + + G
Sbjct: 121 LRGKGK--PPTQVSLSVICTAAGVLIAALGDFSFDLYGYSMALTSVFFQTMYLILVEKSG 178
Query: 221 KSSGLNSFGLMWCNGLVCGPSVLFLTYIQGDLKKAIEFPYLYSP--------GFQAVLLF 272
GL+S LM+ N ++ P + F+ G EFPY S F A+LL
Sbjct: 179 AEDGLSSVELMFYNSVLSLPFLFFIIIATG------EFPYSLSVLSEKTASLTFSAILLV 232
Query: 273 SCMLAFLLNYTIFWNTILNSALTQSMCGNLKDFFTVGIGWVLFGGLPFDLLNVIGQGLGF 332
S ++ +LN+T+FW TI+NSALT ++ G LK + +G+VL GG+ LNV G +
Sbjct: 233 SLVMGIVLNFTMFWCTIVNSALTTTIVGVLKGVGSTTLGFVLLGGVEVHTLNVTGLVINT 292
Query: 333 LGSGLYAYCKIKGK 346
G Y+Y K K
Sbjct: 293 FGGVWYSYAKYMQK 306
>Os08g0107400 Similar to GDP-mannose transporter
Length = 350
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 113/266 (42%), Gaps = 19/266 (7%)
Query: 37 MTRRGAVAALSYMACSVLLVMFNKAALSSYNFPCANVITLLQMVCSTGLLYVLRRLKIIS 96
+ + ++ L+Y S +++ NK LS Y F + L Q + S + I+S
Sbjct: 94 IQNQALLSGLAYCISSCSMILVNKYILSGYGFSAGIFLMLYQNIVS---------VTIVS 144
Query: 97 FTNSEPSVPSDALFFVPFRILLRTTPXXXXXXXXXXXXXESVRGVNVPMYTTLRRTTVVF 156
+ +P++ L + ++ L P S++ +NV M T L+ V
Sbjct: 145 TLSLSGVIPTEPLTWKLIKVWL---PVNIIFVGMLITSMFSLKYINVAMLTILKNVANVL 201
Query: 157 TMTMEYFLAKQKHTPPIIGSVALIVFGAFIAGARDLSFDARGYAIVFVANITTAVYLATI 216
T + E + K++H + S+ L++ A G DLSF+A GY + TA Y T+
Sbjct: 202 TASGETYFFKKQHDRQVWISLTLMIISAIAGGITDLSFNAIGYTWQILNCFLTASYSLTL 261
Query: 217 NRI-------GKSSGLNSFGLMWCNGLVCGPSVLFLTYIQGDLKKAIEFPYLYSPGFQAV 269
+ KS LN ++ N ++ P + L +++ E P L P F V
Sbjct: 262 RHVMDSAKQATKSGNLNELSMVLLNNILSVPLGIILVLGFNEVEYLFETPLLRMPMFWIV 321
Query: 270 LLFSCMLAFLLNYTIFWNTILNSALT 295
+ S +L +++T W +SA T
Sbjct: 322 ITASGVLGLAISFTSMWFLHQSSATT 347
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.141 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,972,412
Number of extensions: 362652
Number of successful extensions: 833
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 831
Number of HSP's successfully gapped: 9
Length of query: 346
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 244
Effective length of database: 11,709,973
Effective search space: 2857233412
Effective search space used: 2857233412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 156 (64.7 bits)