FiT-DB / Search/ Help/ Sample detail

Os06g0188100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF250 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.45 (0.018) R2 : 0.00557
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0604 (0.0378) R2dN8 : 0.00719 R2N8 : 0.00557
σ : 0.338
deviance : 52.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.81 0.224 9.45 0.164 0.742 -0.331 0.0378 0.117 0.0517 4.37 80 783 -- --
22.84 0.223 9.45 0.172 0.742 -0.328 0.0403 -- 0.0518 4.37 80 783 -- --
22.81 0.222 9.45 0.164 0.742 -0.331 -- 0.12 0.0513 4.38 80 783 -- --
22.84 0.223 9.45 0.173 0.743 -0.329 -- -- 0.0531 4.37 80 783 -- --
37.79 0.288 9.45 0.245 -- 0.349 -- 0.0448 0.0711 -- 79 1142 -- --
25.02 0.234 9.45 0.188 0.685 -- 0.0386 -- 0.0665 3.44 -- -- -- --
25.02 0.234 9.45 0.187 0.685 -- -- -- 0.0663 3.44 -- -- -- --
37.8 0.288 9.45 0.247 -- 0.349 -- -- 0.0715 -- 79 1142 -- --
23.54 0.226 9.45 -- 0.751 -0.356 -- -- 0.0419 4.42 78.98 793 -- --
51.34 0.335 9.45 0.216 -- -- -- -- 0.0844 -- -- -- -- --
25.95 0.238 9.45 -- 0.689 -- -- -- 0.0454 3.44 -- -- -- --
36.84 0.283 9.46 -- -- 0.419 -- -- 0.0465 -- 72 59 -- --
52.57 0.338 9.45 -- -- -- -- -- 0.0604 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.12 temperature 25.0 270 < th dose independent rect. 24 9
6 21.37 temperature 20.0 10 > th dose dependent rect. 24 12
8 21.41 temperature 25.0 270 > th dose independent rect. 23 11
15 21.56 temperature 20.0 30 > th dose dependent rect. 6 6
23 21.67 humidity 80.0 720 > th dose independent rect. 12 15
29 21.73 humidity 80.0 720 > th dose independent rect. 14 13
36 21.76 radiation 20.0 30 > th dose independent rect. 15 21
38 21.77 humidity 80.0 720 < th dose independent rect. 11 20
40 21.78 temperature 25.0 90 < th dose independent rect. 3 8
50 21.82 temperature 25.0 90 < th dose independent rect. 3 6
51 21.82 temperature 15.0 1440 > th dose independent rect. 13 11
58 21.84 temperature 25.0 10 > th dose dependent rect. 4 8
64 21.86 temperature 30.0 90 < th dose dependent rect. 3 8
65 21.86 temperature 30.0 90 < th dose dependent rect. 3 12
112 22.00 temperature 25.0 270 < th dose independent sin 7 NA
117 22.01 temperature 30.0 90 < th dose dependent rect. 3 14
120 22.02 humidity 80.0 720 > th dose independent rect. 12 19
129 22.04 temperature 25.0 30 > th dose dependent sin 5 NA
130 22.05 humidity 80.0 720 > th dose independent sin 15 NA
184 22.12 radiation 20.0 30 > th dose independent rect. 7 5
215 22.15 humidity 80.0 720 < th dose independent sin 15 NA
255 22.21 humidity 90.0 720 < th dose dependent rect. 18 12
261 22.22 temperature 25.0 30 > th dose independent rect. 4 8
270 22.23 humidity 80.0 90 > th dose dependent rect. 18 9
273 22.24 temperature 15.0 1440 > th dose independent rect. 4 16
275 22.24 temperature 15.0 1440 > th dose independent rect. 4 20
297 22.26 temperature 15.0 30 > th dose dependent rect. 7 20
298 22.26 radiation 1.0 90 > th dose dependent rect. 15 21
302 22.27 radiation 1.0 90 > th dose dependent rect. 6 6
306 22.28 temperature 15.0 1440 > th dose independent rect. 13 7
310 22.28 temperature 20.0 720 < th dose dependent rect. 19 3
311 22.28 humidity 70.0 720 > th dose dependent rect. 14 13
315 22.29 temperature 25.0 270 > th dose independent sin 7 NA
322 22.29 temperature 30.0 90 < th dose dependent rect. 3 6
331 22.30 temperature 20.0 720 < th dose dependent rect. 21 1
334 22.30 humidity 70.0 720 > th dose dependent rect. 12 15
344 22.31 radiation 1.0 10 > th dose dependent rect. 15 21
356 22.32 temperature 20.0 720 < th dose dependent rect. 15 7
365 22.32 radiation 1.0 90 > th dose dependent rect. 17 19
408 22.35 humidity 90.0 720 > th dose dependent rect. 12 8
422 22.36 precipitation 0.1 14400 > th dose dependent rect. 16 2
430 22.36 atmosphere 995.0 10 > th dose dependent rect. 12 11
440 22.37 temperature 30.0 90 < th dose independent rect. 3 14
463 22.38 humidity 80.0 720 < th dose independent rect. 16 15
480 22.40 temperature 20.0 1440 < th dose independent rect. 21 1
513 22.41 radiation 1.0 10 > th dose dependent rect. 6 6
549 22.43 temperature 15.0 270 > th dose independent rect. 17 13
555 22.43 humidity 90.0 720 > th dose dependent rect. 14 5
558 22.43 radiation 40.0 90 < th dose dependent rect. 3 11
570 22.44 humidity 80.0 720 < th dose independent rect. 16 12
583 22.44 temperature 25.0 270 > th dose dependent rect. 24 8
595 22.45 humidity 60.0 10 > th dose independent rect. 12 11
604 22.45 radiation 30.0 270 < th dose dependent rect. 1 12
626 22.47 humidity 80.0 720 < th dose independent rect. 18 13
637 22.47 humidity 90.0 720 < th dose dependent rect. 18 6
651 22.48 humidity 80.0 720 < th dose independent rect. 18 9
710 22.50 temperature 25.0 720 < th dose dependent rect. 12 1
713 22.50 humidity 50.0 720 > th dose dependent rect. 17 9
724 22.51 temperature 15.0 720 > th dose independent rect. 18 5
725 22.51 humidity 90.0 30 > th dose independent rect. 19 8
727 22.51 temperature 25.0 720 < th dose independent rect. 6 10
734 22.51 wind 7.0 30 < th dose independent rect. 23 13
751 22.52 temperature 25.0 270 > th dose independent rect. 6 4
752 22.52 temperature 25.0 270 > th dose independent rect. 4 6
753 22.52 humidity 80.0 720 < th dose independent rect. 18 7
755 22.52 temperature 20.0 90 > th dose independent rect. 12 11
759 22.52 radiation 20.0 30 < th dose independent rect. 3 11
764 22.52 temperature 30.0 30 < th dose dependent sin 3 NA
778 22.53 temperature 20.0 1440 > th dose independent rect. 21 1
825 22.54 humidity 90.0 720 > th dose dependent rect. 15 2
857 22.55 humidity 60.0 10 > th dose independent rect. 12 20
860 22.55 radiation 1.0 270 > th dose dependent sin 9 NA
861 22.55 wind 3.0 720 > th dose dependent rect. 11 2
931 22.57 humidity 80.0 720 > th dose independent rect. 6 21
934 22.57 humidity 70.0 720 > th dose dependent sin 16 NA
935 22.57 radiation 1.0 90 > th dose dependent sin 6 NA
964 22.58 temperature 25.0 30 > th dose independent rect. 7 5
987 22.58 humidity 80.0 10 > th dose dependent rect. 15 12
996 22.59 radiation 1.0 720 < th dose independent rect. 13 2
1000 22.59 wind 5.0 270 < th dose independent rect. 6 19