BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0613600 Os02g0613600|AK071179
         (135 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0613600  Similar to Trafficking protein particle comple...   281   1e-76
Os04g0503800  Similar to Trafficking protein particle comple...   213   4e-56

>Os02g0613600 Similar to Trafficking protein particle complex protein 2 (Sedlin)
           (MBP-1 interacting protein-2A) (MIP-2A)
          Length = 135

 Score =  281 bits (718), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MASTACFVIVSKNDIPIYEAEVGSAPKREDQAYQHQFILHAALDVVQDLAWATNTMFLKS 60
           MASTACFVIVSKNDIPIYEAEVGSAPKREDQAYQHQFILHAALDVVQDLAWATNTMFLKS
Sbjct: 1   MASTACFVIVSKNDIPIYEAEVGSAPKREDQAYQHQFILHAALDVVQDLAWATNTMFLKS 60

Query: 61  VDRFDDLVVSVYVTAGHTRFMLLHDSRSEDGIKSFFQEVHELYIKIFLNPLYLPGSRITS 120
           VDRFDDLVVSVYVTAGHTRFMLLHDSRSEDGIKSFFQEVHELYIKIFLNPLYLPGSRITS
Sbjct: 61  VDRFDDLVVSVYVTAGHTRFMLLHDSRSEDGIKSFFQEVHELYIKIFLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 135
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135



>Os04g0503800 Similar to Trafficking protein particle complex protein 2 (Sedlin)
           (MBP-1 interacting protein-2A) (MIP-2A)
          Length = 117

 Score =  213 bits (541), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 101/109 (92%), Positives = 106/109 (97%)

Query: 27  KREDQAYQHQFILHAALDVVQDLAWATNTMFLKSVDRFDDLVVSVYVTAGHTRFMLLHDS 86
           ++ED AYQHQFILHAALDVVQDLAW+TN MFLKSVDRF+DLVVSVYVTAGH RFMLLHDS
Sbjct: 9   QKEDLAYQHQFILHAALDVVQDLAWSTNAMFLKSVDRFNDLVVSVYVTAGHARFMLLHDS 68

Query: 87  RSEDGIKSFFQEVHELYIKIFLNPLYLPGSRITSSHFDTKVRALARKYL 135
           RSEDGIKSFFQEVHELYIKIFLNPLYLPGSRITSSHFDTKVRALAR+YL
Sbjct: 69  RSEDGIKSFFQEVHELYIKIFLNPLYLPGSRITSSHFDTKVRALARRYL 117



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,131,857
Number of extensions: 145243
Number of successful extensions: 359
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 2
Length of query: 135
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 45
Effective length of database: 12,336,541
Effective search space: 555144345
Effective search space used: 555144345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 150 (62.4 bits)