Os04g0503800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Trafficking protein particle complex protein 2 (Sedlin) (MBP-1 interacting protein-2A) (MIP-2A).
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Os04g0503800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Trafficking protein particle complex protein 2 (Sedlin) (MBP-1 interacting protein-2A) (MIP-2A).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.68 | 0.3 | 6.55 | -3.86 | 0.56 | -154 | -0.2 | -318 | 0.207 | 2.21 | 14.99 | 4459 | -- | -- |
| 46.25 | 0.319 | 8.69 | 1.06 | 0.57 | -2.23 | -0.259 | -- | 0.296 | 2.24 | 14.99 | 4459 | -- | -- |
| 40.8 | 0.298 | 6.55 | -3.81 | 0.558 | -154 | -- | -318 | 0.22 | 2.18 | 14.99 | 4453 | -- | -- |
| 45.11 | 0.313 | 8.7 | 0.93 | 0.469 | -1.27 | -- | -- | 0.286 | 2.1 | 16.22 | 3010 | -- | -- |
| 59.12 | 0.358 | 6.55 | -3.84 | -- | -155 | -- | -321 | 0.218 | -- | 14.98 | 4289 | -- | -- |
| 55.62 | 0.35 | 8.68 | 1.15 | 0.537 | -- | -0.0101 | -- | 0.32 | 2.31 | -- | -- | -- | -- |
| 55.62 | 0.349 | 8.68 | 1.15 | 0.537 | -- | -- | -- | 0.321 | 2.31 | -- | -- | -- | -- |
| 59.37 | 0.359 | 8.7 | 0.819 | -- | -1.29 | -- | -- | 0.217 | -- | 18.72 | 2732 | -- | -- |
| 53.22 | 0.34 | 8.74 | -- | 0.529 | -1.4 | -- | -- | 0.0468 | 2.11 | 18.8 | 10397 | -- | -- |
| 72.72 | 0.398 | 8.68 | 1.18 | -- | -- | -- | -- | 0.334 | -- | -- | -- | -- | -- |
| 90.74 | 0.446 | 8.71 | -- | 0.559 | -- | -- | -- | 0.192 | 2.34 | -- | -- | -- | -- |
| 67.56 | 0.383 | 8.75 | -- | -- | -1.29 | -- | -- | 0.0189 | -- | 18.01 | 37410 | -- | -- |
| 109.26 | 0.488 | 8.71 | -- | -- | -- | -- | -- | 0.203 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.52 | temperature | 15 | 4320 | < th | dose dependent | rect. | 1 | 18 |
| 4 | 39.59 | temperature | 15 | 4320 | < th | dose dependent | sin | 6 | NA |
| 18 | 39.93 | temperature | 15 | 4320 | < th | dose dependent | rect. | 23 | 11 |
| 30 | 39.98 | temperature | 15 | 4320 | < th | dose dependent | rect. | 23 | 8 |
| 100 | 40.38 | temperature | 20 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 104 | 40.40 | temperature | 20 | 1440 | < th | dose dependent | rect. | 14 | 7 |
| 117 | 40.52 | temperature | 20 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 245 | 41.05 | temperature | 15 | 4320 | < th | dose dependent | no | NA | NA |
| 274 | 41.23 | temperature | 15 | 1440 | > th | dose independent | rect. | 3 | 21 |
| 301 | 41.42 | temperature | 15 | 4320 | < th | dose dependent | rect. | 4 | 11 |
| 306 | 41.46 | temperature | 20 | 1440 | < th | dose dependent | sin | 18 | NA |
| 308 | 41.48 | temperature | 20 | 720 | < th | dose dependent | rect. | 10 | 8 |
| 333 | 41.66 | temperature | 15 | 4320 | < th | dose dependent | rect. | 4 | 8 |
| 336 | 41.67 | temperature | 20 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 347 | 41.73 | temperature | 15 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 348 | 41.73 | humidity | 90 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 361 | 41.77 | temperature | 15 | 1440 | < th | dose independent | sin | 2 | NA |
| 384 | 41.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 387 | 41.84 | temperature | 15 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 405 | 41.88 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 10 |
| 427 | 41.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 431 | 41.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 433 | 41.97 | temperature | 15 | 4320 | < th | dose dependent | rect. | 5 | 5 |
| 451 | 42.01 | humidity | 90 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 470 | 42.07 | temperature | 20 | 270 | < th | dose dependent | sin | 14 | NA |
| 475 | 42.08 | temperature | 15 | 1440 | > th | dose independent | rect. | 13 | 11 |
| 494 | 42.13 | temperature | 15 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 505 | 42.15 | temperature | 15 | 1440 | > th | dose independent | sin | 18 | NA |
| 544 | 42.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 570 | 42.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 572 | 42.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 579 | 42.31 | temperature | 15 | 1440 | < th | dose independent | sin | 18 | NA |
| 644 | 42.42 | temperature | 15 | 1440 | > th | dose independent | rect. | 13 | 20 |
| 649 | 42.43 | temperature | 15 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 685 | 42.51 | temperature | 15 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 715 | 42.55 | temperature | 15 | 1440 | > th | dose independent | sin | 1 | NA |
| 734 | 42.59 | temperature | 15 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 781 | 42.64 | temperature | 15 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 820 | 42.68 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 932 | 42.79 | temperature | 15 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 991 | 42.83 | temperature | 15 | 1440 | > th | dose independent | no | NA | NA |
| 996 | 42.83 | temperature | 15 | 4320 | < th | dose dependent | rect. | 4 | 3 |