BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0613200 Os02g0613200|AK098853
(582 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0613200 Conserved hypothetical protein 1072 0.0
Os04g0503500 Leucine-rich repeat, cysteine-containing subty... 817 0.0
AK105091 384 e-106
>Os02g0613200 Conserved hypothetical protein
Length = 582
Score = 1072 bits (2773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/582 (93%), Positives = 542/582 (93%)
Query: 1 MGAVCSRKRSQLVHEDDSFQTSSRFXXXXXXXXXXXXXPRSNSDVSRKGQGKGPGRCPSL 60
MGAVCSRKRSQLVHEDDSFQTSSRF PRSNSDVSRKGQGKGPGRCPSL
Sbjct: 1 MGAVCSRKRSQLVHEDDSFQTSSRFSKTSSLKWLLLTLPRSNSDVSRKGQGKGPGRCPSL 60
Query: 61 MELCVAKACEDINKYSSFSVLPRDLSQQIFNELVASNRLTETLLETFRDCALQDIDLGEY 120
MELCVAKACEDINKYSSFSVLPRDLSQQIFNELVASNRLTETLLETFRDCALQDIDLGEY
Sbjct: 61 MELCVAKACEDINKYSSFSVLPRDLSQQIFNELVASNRLTETLLETFRDCALQDIDLGEY 120
Query: 121 PGVNDAWMEVVASQRHSLLSVDISCSEITDSGLYLLRDCPNMQSLACNYCDMISEHGLGI 180
PGVNDAWMEVVASQRHSLLSVDISCSEITDSGLYLLRDCPNMQSLACNYCDMISEHGLGI
Sbjct: 121 PGVNDAWMEVVASQRHSLLSVDISCSEITDSGLYLLRDCPNMQSLACNYCDMISEHGLGI 180
Query: 181 LSGLSNLTSLSFKSSDGITAEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLN 240
LSGLSNLTSLSFKSSDGITAEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLN
Sbjct: 181 LSGLSNLTSLSFKSSDGITAEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLN 240
Query: 241 MRYCNNIADSDIKYLSDLTNLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAACL 300
MRYCNNIADSDIKYLSDLTNLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAACL
Sbjct: 241 MRYCNNIADSDIKYLSDLTNLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAACL 300
Query: 301 EAISGLASLVVLNLSRCGIYGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLESL 360
EAISGLASLVVLNLSRCGIYGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLESL
Sbjct: 301 EAISGLASLVVLNLSRCGIYGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLESL 360
Query: 361 NLDSCKVGDEGXXXXXXXXXXXXXELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGM 420
NLDSCKVGDEG ELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGM
Sbjct: 361 NLDSCKVGDEGLLHLRGLMLLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGM 420
Query: 421 KKISALNSLKSVNLDNRQITDVXXXXXXXXXXXXXXDLFGARITDYGTSCFRFFKNLESL 480
KKISALNSLKSVNLDNRQITDV DLFGARITDYGTSCFRFFKNLESL
Sbjct: 421 KKISALNSLKSVNLDNRQITDVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESL 480
Query: 481 EVCGGLITDAGVKNIKDLKALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRVSNAG 540
EVCGGLITDAGVKNIKDLKALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRVSNAG
Sbjct: 481 EVCGGLITDAGVKNIKDLKALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRVSNAG 540
Query: 541 LRHLKDLQNLRSLSLDSCRVTTSEVKKLQATVLPNLISVRPE 582
LRHLKDLQNLRSLSLDSCRVTTSEVKKLQATVLPNLISVRPE
Sbjct: 541 LRHLKDLQNLRSLSLDSCRVTTSEVKKLQATVLPNLISVRPE 582
>Os04g0503500 Leucine-rich repeat, cysteine-containing subtype containing protein
Length = 581
Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/583 (72%), Positives = 468/583 (80%), Gaps = 3/583 (0%)
Query: 1 MGAVCSRKRSQL-VHEDDSFQTSSRFXXXXXXXXXXXXXPRSNSDVSRKGQGKGPGRCPS 59
MG+ CSRKR QL V E+D + S+RF PRS SDV RK QG P RCPS
Sbjct: 1 MGSACSRKRGQLLVDEEDLY--SARFSKSSSFKWLLHTLPRSGSDVHRKVQGPVPVRCPS 58
Query: 60 LMELCVAKACEDINKYSSFSVLPRDLSQQIFNELVASNRLTETLLETFRDCALQDIDLGE 119
LMELCVAK EDI KYS FS+LPRDLSQQ+FNELV N LTE LL FRDCALQDI L +
Sbjct: 59 LMELCVAKVREDIGKYSDFSLLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLAD 118
Query: 120 YPGVNDAWMEVVASQRHSLLSVDISCSEITDSGLYLLRDCPNMQSLACNYCDMISEHGLG 179
YPGV DAWMEV ASQ SLLSVDISCS++TD GL L+DC N+QSL+CNYCD ISEHGL
Sbjct: 119 YPGVRDAWMEVAASQGQSLLSVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLK 178
Query: 180 ILSGLSNLTSLSFKSSDGITAEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESL 239
LSGLSN+TSLSFK +TAE +AFAN+VNL +LDLERC KIHGGLVHLKGLR LE L
Sbjct: 179 TLSGLSNVTSLSFKKCSAVTAEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKL 238
Query: 240 NMRYCNNIADSDIKYLSDLTNLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAAC 299
N+RYCN I DSD+K+LSDLTNL+ELQL+CC+I+DLGVSYLRGLSKL LNLEGC VTAAC
Sbjct: 239 NLRYCNGITDSDMKHLSDLTNLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAAC 298
Query: 300 LEAISGLASLVVLNLSRCGIYGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLES 359
LE ISGLASLV+LNLSRCG+Y EGCE+ +GL KLKVLNLGFN ITD CL HLKELINLE
Sbjct: 299 LEVISGLASLVLLNLSRCGVYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLEC 358
Query: 360 LNLDSCKVGDEGXXXXXXXXXXXXXELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTG 419
LNLDSCK+GDEG ELSDTEVGS+GL+HLSGLRNL+SINLSFTLVTD G
Sbjct: 359 LNLDSCKIGDEGLAHLKGLLKLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIG 418
Query: 420 MKKISALNSLKSVNLDNRQITDVXXXXXXXXXXXXXXDLFGARITDYGTSCFRFFKNLES 479
+KKIS LNSL+S+NLDNRQITD DLFGARITD GT+C ++FKNL+S
Sbjct: 419 LKKISGLNSLRSLNLDNRQITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQS 478
Query: 480 LEVCGGLITDAGVKNIKDLKALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRVSNA 539
LEVCGGLITDAGVKNIKDLKAL LNLSQN NLTDK+LELIS LTALVSLNVSN+RVSN+
Sbjct: 479 LEVCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTALVSLNVSNSRVSNS 538
Query: 540 GLRHLKDLQNLRSLSLDSCRVTTSEVKKLQATVLPNLISVRPE 582
GL HLK LQNLRSLSL+SC+VT E+KKLQ LPNL+SVRPE
Sbjct: 539 GLHHLKPLQNLRSLSLESCKVTAIEIKKLQLAALPNLVSVRPE 581
>AK105091
Length = 364
Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/272 (73%), Positives = 222/272 (81%)
Query: 311 VLNLSRCGIYGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLESLNLDSCKVGDE 370
++NLSRCG+Y EGCE+ +GL KLKVLNLGFN ITD CL HLKELINLE LNLDSCK+GDE
Sbjct: 93 LVNLSRCGVYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDE 152
Query: 371 GXXXXXXXXXXXXXELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGMKKISALNSLK 430
G ELSDTEVGS+GL+HLSGLRNL+SINLSFTLVTD G+KKIS LNSL+
Sbjct: 153 GLAHLKGLLKLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLNSLR 212
Query: 431 SVNLDNRQITDVXXXXXXXXXXXXXXDLFGARITDYGTSCFRFFKNLESLEVCGGLITDA 490
S+NLDNRQITD DLFGARITD GT+C ++FKNL+SLEVCGGLITDA
Sbjct: 213 SLNLDNRQITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDA 272
Query: 491 GVKNIKDLKALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRVSNAGLRHLKDLQNL 550
GVKNIKDLKAL LNLSQN NLTDK+LELIS LTALVSLNVSN+RVSN+GL HLK LQNL
Sbjct: 273 GVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTALVSLNVSNSRVSNSGLHHLKPLQNL 332
Query: 551 RSLSLDSCRVTTSEVKKLQATVLPNLISVRPE 582
RSLSL+SC+VT E+KKLQ LPNL+SVRPE
Sbjct: 333 RSLSLESCKVTAIEIKKLQLAALPNLVSVRPE 364
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 123/267 (46%), Gaps = 3/267 (1%)
Query: 239 LNMRYCNNIADSDIKYLSDLTNLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAA 298
+N+ C + D ++L L LK L L ITD + +L+ L L LNL+ C +
Sbjct: 94 VNLSRCG-VYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDE 152
Query: 299 CLEAISGLASLVVLNLSRCGIYGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLE 358
L + GL L L LS + G + GL+ L+ +NL F +TD L + L +L
Sbjct: 153 GLAHLKGLLKLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLNSLR 212
Query: 359 SLNLDSCKVGDEGXXXXXXXXXXXXXELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDT 418
SLNLD+ ++ D G +L + +G L +NL+S+ + L+TD
Sbjct: 213 SLNLDNRQITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDA 272
Query: 419 GMKKISALNSLKSVNL-DNRQITDVXXXXXXXXXXXXXXDLFGARITDYGTSCFRFFKNL 477
G+K I L +L +NL N +TD ++ +R+++ G + +NL
Sbjct: 273 GVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTALVSLNVSNSRVSNSGLHHLKPLQNL 332
Query: 478 ESLEVCGGLITDAGVKNIKDLKALKQL 504
SL + +T +K ++ L AL L
Sbjct: 333 RSLSLESCKVTAIEIKKLQ-LAALPNL 358
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 134/279 (48%), Gaps = 9/279 (3%)
Query: 157 RDCPNMQSLACNYCDMISEHGLGILSGLSNLTSLSFKSSDGITAEAMEAFANLVNLVNLD 216
R C + C D EH L GL L L+ + IT + L+NL L+
Sbjct: 89 RPCWLVNLSRCGVYDEGCEH----LEGLVKLKVLNL-GFNYITDACLVHLKELINLECLN 143
Query: 217 LERCLKIHGGLVHLKGLRNLESLNMRYCNNIADSDIKYLSDLTNLKELQLACCRITDLGV 276
L+ C GL HLKGL L SL + + + +++LS L NL+ + L+ +TD+G+
Sbjct: 144 LDSCKIGDEGLAHLKGLLKLRSLELSD-TEVGSNGLRHLSGLRNLQSINLSFTLVTDIGL 202
Query: 277 SYLRGLSKLTQLNLEGCPVTAACLEAISGLASLVVLNLSRCGIYGEGCENFQGLKKLKVL 336
+ GL+ L LNL+ +T L A++ L L L+L I G + K L+ L
Sbjct: 203 KKISGLNSLRSLNLDNRQITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSL 262
Query: 337 NLGFNNITDDCLAHLKELINLESLNL-DSCKVGDEGXXXXXXXXXXXXXELSDTEVGSSG 395
+ ITD + ++K+L L LNL + + D+ +S++ V +SG
Sbjct: 263 EVCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTALVSLNVSNSRVSNSG 322
Query: 396 LQHLSGLRNLESINLSFTLVTDTGMKK--ISALNSLKSV 432
L HL L+NL S++L VT +KK ++AL +L SV
Sbjct: 323 LHHLKPLQNLRSLSLESCKVTAIEIKKLQLAALPNLVSV 361
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,744,517
Number of extensions: 565028
Number of successful extensions: 4282
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 4113
Number of HSP's successfully gapped: 12
Length of query: 582
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 476
Effective length of database: 11,501,117
Effective search space: 5474531692
Effective search space used: 5474531692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)