BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0609400 Os02g0609400|AK061315
         (158 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0609400  Conserved hypothetical protein                      301   9e-83
Os02g0599500  Conserved hypothetical protein                       99   2e-21

>Os02g0609400 Conserved hypothetical protein
          Length = 158

 Score =  301 bits (772), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 146/158 (92%), Positives = 146/158 (92%)

Query: 1   MADGNPDGIKRYTPPVHRNRANNRRKSGDRAEKASYLYNNDGEKSHAPSLKNLPPIIPHE 60
           MADGNPDGIKRYTPPVHRNRANNRRKSGDRAEKASYLYNNDGEKSHAPSLKNLPPIIPHE
Sbjct: 1   MADGNPDGIKRYTPPVHRNRANNRRKSGDRAEKASYLYNNDGEKSHAPSLKNLPPIIPHE 60

Query: 61  TFFSNPQNDYSQTRLIPLEGCCASEAAQLLNDRWAAAMNLYNDQSYDSPDKPVMYXXXXX 120
           TFFSNPQNDYSQTRLIPLEGCCASEAAQLLNDRWAAAMNLYNDQSYDSPDKPVMY     
Sbjct: 61  TFFSNPQNDYSQTRLIPLEGCCASEAAQLLNDRWAAAMNLYNDQSYDSPDKPVMYSGSSG 120

Query: 121 XXXXXXXMKLPHQMNFSEELRRALDEQPVTGPSVNTWN 158
                  MKLPHQMNFSEELRRALDEQPVTGPSVNTWN
Sbjct: 121 SSWGHGHMKLPHQMNFSEELRRALDEQPVTGPSVNTWN 158



>Os02g0599500 Conserved hypothetical protein
          Length = 61

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/61 (78%), Positives = 48/61 (78%)

Query: 98  MNLYNDQSYDSPDKPVMYXXXXXXXXXXXXMKLPHQMNFSEELRRALDEQPVTGPSVNTW 157
           MNLYNDQSYDSPDKPVMY            MKLPHQMNF EELRRALDEQPVTGPSVNTW
Sbjct: 1   MNLYNDQSYDSPDKPVMYSGSSGSSWGHGHMKLPHQMNFFEELRRALDEQPVTGPSVNTW 60

Query: 158 N 158
           N
Sbjct: 61  N 61



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.130    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,876,995
Number of extensions: 216926
Number of successful extensions: 422
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 422
Number of HSP's successfully gapped: 2
Length of query: 158
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 65
Effective length of database: 12,179,899
Effective search space: 791693435
Effective search space used: 791693435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 152 (63.2 bits)