BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0606700 Os02g0606700|AK063512
(243 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0606700 Conserved hypothetical protein 448 e-126
Os01g0898400 Conserved hypothetical protein 74 7e-14
>Os02g0606700 Conserved hypothetical protein
Length = 243
Score = 448 bits (1153), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/243 (90%), Positives = 221/243 (90%)
Query: 1 MAAPTATAVFLDENLHIHRGPAGKRADGXXXXXXXXXXXXQGLQEKKALRDVSNIGKPPV 60
MAAPTATAVFLDENLHIHRGPAGKRADG QGLQEKKALRDVSNIGKPPV
Sbjct: 1 MAAPTATAVFLDENLHIHRGPAGKRADGLKAKPLKPLAAKQGLQEKKALRDVSNIGKPPV 60
Query: 61 STRKPLQDVSNTAKPRGRNISDGTTLKKTALRSHEATKNPVKKTVIFSDETAKCHEWAKD 120
STRKPLQDVSNTAKPRGRNISDGTTLKKTALRSHEATKNPVKKTVIFSDETAKCHEWAKD
Sbjct: 61 STRKPLQDVSNTAKPRGRNISDGTTLKKTALRSHEATKNPVKKTVIFSDETAKCHEWAKD 120
Query: 121 GVEGTHFTGNDSQKLEKDSQDKRVKKKVEKIMSALHDWPDAVFDHVLFPSXXXXXXXXXX 180
GVEGTHFTGNDSQKLEKDSQDKRVKKKVEKIMSALHDWPDAVFDHVLFPS
Sbjct: 121 GVEGTHFTGNDSQKLEKDSQDKRVKKKVEKIMSALHDWPDAVFDHVLFPSEVVAAFFEEV 180
Query: 181 KEMELEPEILPENNRRRSSSGDKMKLAEDPFTEDELDYYPFLENNPVEFQLRDELPLLEP 240
KEMELEPEILPENNRRRSSSGDKMKLAEDPFTEDELDYYPFLENNPVEFQLRDELPLLEP
Sbjct: 181 KEMELEPEILPENNRRRSSSGDKMKLAEDPFTEDELDYYPFLENNPVEFQLRDELPLLEP 240
Query: 241 GMN 243
GMN
Sbjct: 241 GMN 243
>Os01g0898400 Conserved hypothetical protein
Length = 204
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 106/233 (45%), Gaps = 34/233 (14%)
Query: 3 APTATAVFLDENLHIHRGPAGKRADGXXXXXXXXXXXXQGLQEKKALRDVSNIGKPPVST 62
A A +ENL I RG GK+A G QE++AL D+S
Sbjct: 2 ASRAPIAIQNENLPIFRGIDGKKAGAAARV---------GRQERRALGDLSK-------- 44
Query: 63 RKPLQDVSNTAKPRGRNISDGTTLKKTALRSHEAT-KNPVKKTVIFSDETAKCHEWAKDG 121
+ A+P + T K TA S + KN VK + + ++ KC EWAKDG
Sbjct: 45 -------ARRARP-----ASSTGGKATAAASVGGSGKNLVKPSYLSDEDWMKCCEWAKDG 92
Query: 122 VEGTHFTGNDSQKLEKDSQDKRVKKKVEKIMSALHDWPDAVFDHVLFPSXXXXXXXXXXK 181
VE FTGND QKL D ++R++KKVEK M + D+++ + S
Sbjct: 93 VETASFTGNDMQKLLSDKLEERIQKKVEKAMGTMQLSMDSLY-RIDAHSKACMVDPEDKT 151
Query: 182 EMELEPEILPENNRRRSSSGDKMKLAEDPFTEDELDYYPFLENNPVEFQLRDE 234
E++L+ E LP + S G+ A ++ E ++ F N ++ +L++E
Sbjct: 152 ELDLDTEFLPPMSYLSSRLGEHN--ANHVLSDLEFEHETFANCN-LDLKLKEE 201
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.130 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,083,370
Number of extensions: 310172
Number of successful extensions: 593
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 591
Number of HSP's successfully gapped: 2
Length of query: 243
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 145
Effective length of database: 11,918,829
Effective search space: 1728230205
Effective search space used: 1728230205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 154 (63.9 bits)