Os01g0898400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0898400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.64 | 0.331 | 8.34 | -1.16 | 0.0564 | -0.649 | -1.02 | 0.112 | 0.0466 | 16.6 | 1010 | 9822 | -- | -- |
| 48.54 | 0.324 | 8.34 | -1.16 | 0.0473 | -0.632 | -1.06 | -- | 0.0427 | 16.5 | 1011 | 13930 | -- | -- |
| 51.29 | 0.334 | 8.35 | -1.24 | 0.0507 | -0.63 | -- | 0.221 | 0.018 | 16.6 | 1011 | 14092 | -- | -- |
| 51.5 | 0.334 | 8.35 | -1.15 | 0.0526 | -0.629 | -- | -- | 0.0363 | 18.8 | 1011 | 14037 | -- | -- |
| 51.33 | 0.334 | 8.36 | -1.26 | -- | -0.622 | -- | 0.295 | 0.00819 | -- | 1011 | 15150 | -- | -- |
| 67.28 | 0.385 | 8.29 | -0.833 | 0.0381 | -- | -1.09 | -- | 0.247 | 16.4 | -- | -- | -- | -- |
| 70.45 | 0.393 | 8.3 | -0.842 | 0.0499 | -- | -- | -- | 0.241 | 19.6 | -- | -- | -- | -- |
| 51.64 | 0.335 | 8.34 | -1.16 | -- | -0.632 | -- | -- | 0.0353 | -- | 1011 | 13992 | -- | -- |
| 81.46 | 0.42 | 8.3 | -- | 0.066 | -0.506 | -- | -- | 0.218 | 17.9 | 1008 | 15760 | -- | -- |
| 70.58 | 0.393 | 8.3 | -0.843 | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
| 89.15 | 0.442 | 8.28 | -- | 0.059 | -- | -- | -- | 0.335 | 18.6 | -- | -- | -- | -- |
| 81.68 | 0.421 | 8.3 | -- | -- | -0.503 | -- | -- | 0.217 | -- | 1008 | 15722 | -- | -- |
| 89.33 | 0.441 | 8.28 | -- | -- | -- | -- | -- | 0.334 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.49 | temperature | 15 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 8 | 46.83 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 13 | 46.88 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 14 | 46.89 | temperature | 15 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 38 | 47.08 | temperature | 15 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 44 | 47.12 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 21 |
| 47 | 47.13 | humidity | 50 | 43200 | < th | dose dependent | rect. | 17 | 19 |
| 50 | 47.14 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 55 | 47.15 | radiation | 40 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 74 | 47.17 | temperature | 15 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 75 | 47.17 | temperature | 15 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 94 | 47.22 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 105 | 47.24 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 112 | 47.26 | temperature | 15 | 43200 | < th | dose independent | sin | 5 | NA |
| 115 | 47.26 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 117 | 47.26 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 15 |
| 123 | 47.27 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 18 |
| 124 | 47.27 | temperature | 15 | 43200 | < th | dose dependent | sin | 6 | NA |
| 140 | 47.29 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 163 | 47.31 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 172 | 47.31 | temperature | 15 | 43200 | < th | dose dependent | rect. | 17 | 13 |
| 227 | 47.36 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 256 | 47.38 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 257 | 47.38 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 14 |
| 275 | 47.39 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 285 | 47.40 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 327 | 47.42 | temperature | 15 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 344 | 47.43 | temperature | 15 | 43200 | > th | dose independent | sin | 4 | NA |
| 416 | 47.45 | humidity | 50 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 417 | 47.45 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 457 | 47.47 | temperature | 15 | 43200 | > th | dose independent | rect. | 15 | 18 |
| 458 | 47.47 | temperature | 15 | 43200 | < th | dose independent | rect. | 12 | 19 |
| 478 | 47.48 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 499 | 47.48 | humidity | 50 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 525 | 47.49 | humidity | 50 | 43200 | < th | dose dependent | sin | 9 | NA |
| 550 | 47.50 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 15 |
| 587 | 47.51 | temperature | 15 | 43200 | > th | dose independent | rect. | 12 | 21 |
| 672 | 47.54 | temperature | 15 | 43200 | < th | dose independent | no | NA | NA |
| 673 | 47.54 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 687 | 47.54 | temperature | 15 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 793 | 47.57 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 828 | 47.60 | temperature | 15 | 43200 | > th | dose independent | no | NA | NA |
| 842 | 47.60 | temperature | 15 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 861 | 47.62 | radiation | 20 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 862 | 47.62 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 872 | 47.62 | temperature | 15 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 903 | 47.64 | radiation | 40 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 906 | 47.64 | radiation | 40 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 924 | 47.66 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 933 | 47.67 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 952 | 47.68 | radiation | 40 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 970 | 47.69 | radiation | 20 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 973 | 47.69 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 977 | 47.70 | radiation | 40 | 43200 | < th | dose independent | rect. | 2 | 6 |