BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0596000 Os02g0596000|AK072766
(292 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0596000 Rhodanese-like domain containing protein 451 e-127
Os09g0279400 Rhodanese-like domain containing protein 79 4e-15
>Os02g0596000 Rhodanese-like domain containing protein
Length = 292
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/292 (80%), Positives = 234/292 (80%)
Query: 1 MAAPPSPLGLARRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVRMXXXXXXXXX 60
MAAPPSPLGLARRV GVVRM
Sbjct: 1 MAAPPSPLGLARRVSGAGAATPAAAWSSSCRSRRLRPRLLPSKRWSGVVRMGAAVGGEQE 60
Query: 61 XXXXXXKLAKEMAAARRRWETLIREQKIKTLTPREAGYTFKLTDKVLLDVRPSNERQKAW 120
KLAKEMAAARRRWETLIREQKIKTLTPREAGYTFKLTDKVLLDVRPSNERQKAW
Sbjct: 61 GEDEEVKLAKEMAAARRRWETLIREQKIKTLTPREAGYTFKLTDKVLLDVRPSNERQKAW 120
Query: 121 VKGSTWIPVFDVDTSFDLGGAGKKFTNYVMGGWWSGSSTMTVNKNFVQQVEEKFSKDTDI 180
VKGSTWIPVFDVDTSFDLGGAGKKFTNYVMGGWWSGSSTMTVNKNFVQQVEEKFSKDTDI
Sbjct: 121 VKGSTWIPVFDVDTSFDLGGAGKKFTNYVMGGWWSGSSTMTVNKNFVQQVEEKFSKDTDI 180
Query: 181 IVVCQKGLRSLAACEQLYGAGFQNLFWVQGGLXXXXXXXXXXXGPQPFKLAGIGGVSEFF 240
IVVCQKGLRSLAACEQLYGAGFQNLFWVQGGL GPQPFKLAGIGGVSEFF
Sbjct: 181 IVVCQKGLRSLAACEQLYGAGFQNLFWVQGGLEAAEEEDFEREGPQPFKLAGIGGVSEFF 240
Query: 241 GWTDQQRAQAVKEGLGYRLIFTGRLVGALVLVDALFLGAQRIGPLLQELQSR 292
GWTDQQRAQAVKEGLGYRLIFTGRLVGALVLVDALFLGAQRIGPLLQELQSR
Sbjct: 241 GWTDQQRAQAVKEGLGYRLIFTGRLVGALVLVDALFLGAQRIGPLLQELQSR 292
>Os09g0279400 Rhodanese-like domain containing protein
Length = 239
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Query: 95 EAGYTFKLTDKVLLDVRPSNERQKAWVKGSTWIPVFDVDTSFDLGGAGKKFTNYVMGGWW 154
E GYT +LD+R +R++A +K S +P+F + D+G K+ + G +
Sbjct: 65 EEGYT-------VLDIRDRTQRERAHIKNSAHVPLFVENDDGDIGTIIKRTVHSNFAGLF 117
Query: 155 SGSSTMTVNKNFVQQVEEKFSKDTDIIVVCQKGLRSLAACEQLYGAGFQNLFWVQGGLXX 214
G N F + V++KFS ++ ++VVCQ+GLRS A + L GFQNL ++ GL
Sbjct: 118 FGLPFTKRNLEFTKMVKDKFSPESKLLVVCQEGLRSTGAADVLEREGFQNLACIKSGLQT 177
Query: 215 XXXXXXXXXGPQPFKLAGIGGV 236
G + AG G+
Sbjct: 178 LKPGTFESVGKSELQNAGKAGL 199
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,095,622
Number of extensions: 306547
Number of successful extensions: 484
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 2
Length of query: 292
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 192
Effective length of database: 11,814,401
Effective search space: 2268364992
Effective search space used: 2268364992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)