BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0586800 Os02g0586800|AK069595
         (319 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0586800  Tetratricopeptide region domain containing pro...   566   e-162
Os01g0510600  Tetratricopeptide-like helical domain containi...   246   2e-65

>Os02g0586800 Tetratricopeptide region domain containing protein
          Length = 319

 Score =  566 bits (1460), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 282/319 (88%), Positives = 282/319 (88%)

Query: 1   MPARAAALSCRGVSPHPRAHSXXXXXXXXXXXXFADEAAAAPLRVSSVPHSRAYGCGGGG 60
           MPARAAALSCRGVSPHPRAHS            FADEAAAAPLRVSSVPHSRAYGCGGGG
Sbjct: 1   MPARAAALSCRGVSPHPRAHSLLPGRRRRPVLPFADEAAAAPLRVSSVPHSRAYGCGGGG 60

Query: 61  YFVHLEDRDDGEASXXXXXXXXXXPDHQKWAQPDLLKAAVISTMSILAVPLEASASAETC 120
           YFVHLEDRDDGEAS          PDHQKWAQPDLLKAAVISTMSILAVPLEASASAETC
Sbjct: 61  YFVHLEDRDDGEASRLLRALRRVLPDHQKWAQPDLLKAAVISTMSILAVPLEASASAETC 120

Query: 121 QPANSMANMPIFXXXXXXXXXXXXXXXRQRKEELKRLNTQLRQINTALRRQAQIESFAPG 180
           QPANSMANMPIF               RQRKEELKRLNTQLRQINTALRRQAQIESFAPG
Sbjct: 121 QPANSMANMPIFIAVALIGAAVGGLLARQRKEELKRLNTQLRQINTALRRQAQIESFAPG 180

Query: 181 LTYAPVGRATETEVIVDPRKQQLTVNLRNGKTFMRNQDLDMAVKEFRAALELAKSVGDRF 240
           LTYAPVGRATETEVIVDPRKQQLTVNLRNGKTFMRNQDLDMAVKEFRAALELAKSVGDRF
Sbjct: 181 LTYAPVGRATETEVIVDPRKQQLTVNLRNGKTFMRNQDLDMAVKEFRAALELAKSVGDRF 240

Query: 241 EEKKAARGLGASLQRLGKYREAMNCYYKVLELSKETGEDSGCTEAYGAIADCYTELGDLE 300
           EEKKAARGLGASLQRLGKYREAMNCYYKVLELSKETGEDSGCTEAYGAIADCYTELGDLE
Sbjct: 241 EEKKAARGLGASLQRLGKYREAMNCYYKVLELSKETGEDSGCTEAYGAIADCYTELGDLE 300

Query: 301 RAAKLYDKYISRLQPGGGE 319
           RAAKLYDKYISRLQPGGGE
Sbjct: 301 RAAKLYDKYISRLQPGGGE 319



>Os01g0510600 Tetratricopeptide-like helical domain containing protein
          Length = 324

 Score =  246 bits (627), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 130/230 (56%), Positives = 162/230 (70%), Gaps = 4/230 (1%)

Query: 86  DHQKWAQPDLLKAAVISTMSILAVPLEASASAETCQPANSMANMPIFXXXXXXXXXXXXX 145
           D QK       KA ++S++ ++  P   S  AE C+P  S+ NMP+              
Sbjct: 96  DLQKVISSCFGKACLLSSVMLVLPP---SCFAEPCEPEYSLPNMPLLFAIAMIGATVGGL 152

Query: 146 XXRQRKEELKRLNTQLRQINTALRRQAQIESFAPGLTYAPVG-RATETEVIVDPRKQQLT 204
             RQR+ ELKRLN QLRQIN ALRRQA+IES+AP L+YAPVG +  E+EVIVDP+K +L 
Sbjct: 153 LARQRRGELKRLNDQLRQINAALRRQAKIESYAPSLSYAPVGSKIPESEVIVDPQKDRLI 212

Query: 205 VNLRNGKTFMRNQDLDMAVKEFRAALELAKSVGDRFEEKKAARGLGASLQRLGKYREAMN 264
             LR GK ++RNQ  D A  EF+AA +LA+S+GD  EEKKAARGLGASLQR GKY+EA+ 
Sbjct: 213 SYLRAGKNYLRNQAPDKAFPEFKAAFDLAQSLGDHVEEKKAARGLGASLQRQGKYKEAIK 272

Query: 265 CYYKVLELSKETGEDSGCTEAYGAIADCYTELGDLERAAKLYDKYISRLQ 314
            +  VL +SK TGED+G TEAYGAIADCYTELG+LE+A K YDKYI+RL+
Sbjct: 273 YHSMVLNISKLTGEDAGVTEAYGAIADCYTELGELEKAGKFYDKYIARLE 322



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,646,760
Number of extensions: 353505
Number of successful extensions: 1179
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1178
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 218
Effective length of database: 11,762,187
Effective search space: 2564156766
Effective search space used: 2564156766
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)